Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01838 ATGGATAAAAAACAGTGCAACACGTCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACAATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGAGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTGGTCTTAAACGTACCGGGAAGAGTTGCCGGCTAAGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCTGAGGAACAACTTTTGATCATGGAGCTTCACGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCCAAGCATCTACCTGGAAGGACTGATAATGAGATAAAAAACTATTGGAGGACCAGGATCCAGAAGCACATCAAGCAAGCTGAGAGCTTTCAGCAACAGAGTAATAATTCTGAGATAAATGACCACCAAGCTAGCACTAGCCAAGTTTCCACCATGGCTGAGCCCATGGAGACCTACTCTTCACCCTGTTACCAAGGAATGTTAGAGCCATTTTCAGCTCAGTTCCCCACAATTCCTGATCATCAATCCAGTTGTTGTACCAATGACAACAGCAACTATTGGACCATGGAGGATATCTGGTCAATGCAATTACTGAATGGAGATTAA 609 0.4401 MDKKQCNTSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAESFQQQSNNSEINDHQASTSQVSTMAEPMETYSSPCYQGMLEPFSAQFPTIPDHQSSCCTNDNSNYWTMEDIWSMQLLNGD 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01838 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pumo5g01838 202 MobiDBLite consensus disorder prediction 122 141 - -
Pumo5g01838 202 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pumo5g01838 202 Gene3D - 16 68 - -
Pumo5g01838 202 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Pumo5g01838 202 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 146 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo5g01838 202 CDD SANT 73 112 IPR001005 -
Pumo5g01838 202 SMART sant 68 116 IPR001005 -
Pumo5g01838 202 SMART sant 15 65 IPR001005 -
Pumo5g01838 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pumo5g01838 202 FunFam Myb-related protein 305 73 143 - -
Pumo5g01838 202 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pumo5g01838 202 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pumo5g01838 202 CDD SANT 18 63 IPR001005 -
Pumo5g01838 202 Gene3D - 73 145 - -
Pumo5g01838 202 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pumo5g01838 202 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01838 Pumo-Chr5 51466467 51469843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01838 4 202 MYB Transcription Factor Family AT3G01530 57.635 1.59e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g01838 Myb_DNA-binding 6.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01838 K09422 - gmx:778046 390.193