Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01832 ATGCTTCCACTTCAATTCAGCACCCACCCTCCAACTCCATCATCGCTGTTTCTGAGCAGCTCCAACGCTTGTTGCTCCTCCTCCTCTCGCCTCCTCTACCACAACAGAAACAGAAACAAGGTGCACCTTCTTCGCTCCAACGTTGGAACCCTCAACCTTAGGGTTTTCGCCGCAGCGTCTGGTAGTAACTCCGCATTCAAGATGAACCTCAACGAGTACCTCGTCACTCTCGAGAAGCCCCTCGGCATCCGATTCGCTCTCACCGCTGACGGCAAAATCATCGTCCACTCTCTCACCAAAGGGGGCAATGGGGAGAGGTCCAGGATAATTATGGTGGGTGACACTTTGAAGAAAGCTGGCGATTCGTCTCAGAACACTCTTGTCGAGATTAAAGACGTTGGAGATACACAGAAGGTGCTAAATGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCAACATCTCCTTTTCCCATTCAACTACTGCACAAGATGAATGATCTTGAAATAGTGTTTAATAGAGGTCGAGTTCCGATTGCCACATGGAACCAGACCCTATTGGCATCAAATTTACAACCATCTAGTGAGAGCTGCGGGAATGCAGGATTTTTGATGTTCAACTCAAAATTTCTTAAACCAAATGGAAGCAAGTTATTGGGCAATCAAAATCAACATACCATCACCCATGGTGAGAGAAACTTTGTTACTGAACACACAACACAACTTGCTTGTGTTTTTACTGAAGAAGTGTGTGGAGATGGAGATTGGGCTCATGGAAGTTTTCCACTCGAGGAATATATTCAGGCTCTGGATCGTTCCAAGGATGAGATGTACTATAATCACTCTCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTAGGATCCTGTATACAAACAGAAGATGATGTAGAAACCTTGTCAAAAGTTGAGGGAGTTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGCAAAATCAATCAATGAATCTTGTCAAAGGAATAATATTCTCATGATCAACTATCCTATACGGGAGGGAGATTCTTATGATATGAGGAAAAAACTTCCATTTTGTGTGGGGCTTTTATTACGGTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATACCTACATTGGATGACAGATGTTTCCCTTCATGCAGCATATACTTGGGTCACTGGGATGCACACGTGCAGGCCTGACAGGCCGGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAACGGCAGACACGATGGACCTCCCACACATGCTGTCACGTTTGTGTGGAATGGTCATGAGGGAGAGGATGTAACTTTGGTAGGAGACTTTACTGGAAATTGGAAAGAACCACTCAAGGCAAAGCACCAAGGTGGATCAAGACACGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAACGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCCAGCGTTCGGCCTTTTGTTCAACACCAGCAGAAAGATGCCAACGTTGTCAAGGTGATCGAAAGGCCTTTGAATGAAAAAGAGCGGTTTATGCTGGCAAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGTCCTATCAGATTAGCTCCCAAATAG 1764 0.4399 MLPLQFSTHPPTPSSLFLSSSNACCSSSSRLLYHNRNRNKVHLLRSNVGTLNLRVFAAASGSNSAFKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNGERSRIIMVGDTLKKAGDSSQNTLVEIKDVGDTQKVLNEQTSSFSLVLERPTSPFPIQLLHKMNDLEIVFNRGRVPIATWNQTLLASNLQPSSESCGNAGFLMFNSKFLKPNGSKLLGNQNQHTITHGERNFVTEHTTQLACVFTEEVCGDGDWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSKVEGVTAVLNFQSGTEAENWGINAKSINESCQRNNILMINYPIREGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLKAKHQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIVIGETASVRPFVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSICPIRLAPK 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01832 587 CDD E_set_AMPKbeta_like_N 454 533 - -
Pumo5g01832 587 Pfam Dual specificity phosphatase, catalytic domain 296 417 IPR000340 GO:0008138|GO:0016311
Pumo5g01832 587 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 277 420 IPR029021 -
Pumo5g01832 587 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 441 537 - -
Pumo5g01832 587 Pfam Glycogen recognition site of AMP-activated protein kinase 454 535 IPR032640 -
Pumo5g01832 587 Gene3D Protein tyrosine phosphatase superfamily 280 546 IPR029021 -
Pumo5g01832 587 Gene3D Immunoglobulins 441 537 IPR013783 -
Pumo5g01832 587 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 280 446 - -
Pumo5g01832 587 SUPERFAMILY E set domains 451 534 IPR014756 -
Pumo5g01832 587 CDD DSP_laforin-like 286 432 IPR045204 GO:0019203
Pumo5g01832 587 ProSiteProfiles Dual specificity protein phosphatase domain profile. 287 446 IPR020422 GO:0006470|GO:0008138
Pumo5g01832 587 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 46 585 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01832 139 587 Protein tyrosine phosphatase (PTP) family AT3G01510 68.374 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01832 - - gmx:100814503 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01832 5 51086870 51093744 Pumo5g01832 5 51086870 51093744 ECH