Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01830 ATGGATTGCAGAATAGAGAGTGCAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCCGACAGTTCAACAAACTGGAGCACCTTGTGGAGCACATGAGGATCTCATTCCATTCGGTTCATGAACCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTCAGGGAACATCTTATAGGTCCATTGCCAAAACAAGAATGCAGAGATATATTTGCCAATAGAGGGTGCAGGTTTTGTTTGAAAGTCCTTGACAGCCCTAACTCTCGCAGGATCCACCAAGAAAAATGCCAACTCTCAGGAACAAATGCTGGAATAATAATTGGTCGCTTTTCAAACTTGGGACTTCGTGATAATTTGGCTATTGGTGGTGGAGCAAGAGGACCACAAGTAGTTGCTCTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTCTGTGCAAGAGTGTGCTTAATCGATGAGCATGAGAACATGATATTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTACAGGTATGAGACAACAGGCATCAGACCAGAATACCTGAGGGATGCAATGCCAATGAGACAAGTTCAGAGGAGGATTCAAGATTTCCTTTGCAATGGTGAGCCTATGTGGACAATTCGGGCAAGAGGTGGAAGAGCCAGGATTCTTGTGGGTCATGGTTTGGATCATGACCTTGAAAGTTTGCAAATAGAATATCGAGCTGAAAAAATAAGGGACACTGCAAAATACCCTCCACTGATGAAAACAAGCAAGCTGAGCAACTCACTCAAGTATGACATTCAAACTGGGATTCAGGATCCTTATGAGGATTGTGTTGCAACCATGAGGCTCTACATGAGAATGAGATCCCAAGTGCATAGAATACAGGATTACCCTTTGGCATCTGACCCCCAAAACAGGAACAATTTTGCTTCATGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTTGAAATCTCAAGGTCTGACTACTACTGCTGGTGCTTGGATTCCTTGTATAATCCCTGA 1050 0.44 MDCRIESAETHRNKCAACFRQFNKLEHLVEHMRISFHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDIFANRGCRFCLKVLDSPNSRRIHQEKCQLSGTNAGIIIGRFSNLGLRDNLAIGGGARGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENMIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRRIQDFLCNGEPMWTIRARGGRARILVGHGLDHDLESLQIEYRAEKIRDTAKYPPLMKTSKLSNSLKYDIQTGIQDPYEDCVATMRLYMRMRSQVHRIQDYPLASDPQNRNNFASWRQSELERMSPEQMLEISRSDYYCWCLDSLYNP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01830 349 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Pumo5g01830 349 Gene3D - 130 305 IPR036397 GO:0003676
Pumo5g01830 349 Pfam Exonuclease 153 253 IPR013520 -
Pumo5g01830 349 FunFam RNA exonuclease 4 129 308 - -
Pumo5g01830 349 SMART exoiiiendus 132 298 IPR013520 -
Pumo5g01830 349 CDD REX4_like 134 289 IPR037431 GO:0006364|GO:0008408
Pumo5g01830 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Pumo5g01830 349 SUPERFAMILY Ribonuclease H-like 146 293 IPR012337 -
Pumo5g01830 349 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 344 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01830 Pumo-Chr5 51045414 51047475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01830 1 346 C2H2 Transcription Factor Family AT3G27970 73.389 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01830 - - gmx:100813973 690.263