Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01824 ATGTATAGAATACTATCGACGCCGGCGTCCAAGTTCCGCCAGTTCCGGCGACTCCGGTCTCGACCGAAGACAGCGACAGCGACAGAGGAGGAGCACGCGTTCCAGATCCTATGGCGGTACCAGATCCTGGACCCCGACAGCGACATCGTGGCCTATTGGAACCGGGTGTTCCTTGTGACCAGCCTCCTCGCCCTCTTCGTGGACCCTCTCTACTTCTTCCTCCCCACCGTGGGTGGCCCCGCATGCCTCCAAGCAGACCCCAAACTCAGCATCCTCGTCACCATCCTCCGCTCCTTCGCCGACCTCTTCTACGTCCTCCACATGCTCATGAAGTTCCGCACCGCCTTCGTCGCCCCCAACTCTAGAATCTTCGGCCGCGGCGACCTCGTCATGGACGCCCGCGAAATCGCCATGCGTTACCTCAAGTCTGATTTCGTCATTGACCTCGCTGCCACCATCCCTCTCCCCCAGATTGTGATTTGGTTGGTGATTCCAGCGAGTAGAAATGCAAGAACTGACCATGCCAACAACACTCTTGCGCTTTTTGTTCTTATTCAGTATGTTCCTAGGTTGTTTCTTATCTATCCTTTGAACCAGCGTATTCAGAAAACCACTGGTGTTATTGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTGTTCTCTACATGCTAGCAAGCCATGTTACTGGAGCGACTTGGTATCTATCGTCAATAGGGAGGCAATTTAACTGCTGGAAAACACAGTGCGAACAGGAGAACAAATCACATACCCTTTCTTGCTTTTCTAGTTATCTTGATTGCAATAGTTTGAACCTCCCTGATAGGCAATACTGGCTAAACATCACCCATGTAATCAGCAGATGTGACGCAAAGAGCAAGATCAACATCAAATATAAGTTTGGGATGTTCGCAGATGCTTTCCTGAATGATGTTGTCACTTCCAGTTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATTTAAGCTCATATGGACAGAATTTGGACACCACCACATATCTTCCAGAGACACTCTTTTGCATTGTCTTATGCATTGCTGGATTGGTTCTCTTTTCACTTTTGATTGGAAACATGCAGACGTACTTGTCATCAATGTCAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGACACTGAAGAGTGGATGAGGCATCGCCAGTTACCACAAGATTTGCAGGAACGTGTCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTAATGAAGAAGCCATACTGCTTTCGTTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTACCCTTCTTCTCACAAATGGATGATCAACTTCTTGATGCAATTTGTGAACGCCTTGTGTCATCACTAAGCACTGAAGGCACCTACATATTTCGAGAGGGTGATCCAGTGGATGAAATGCTGTTTATCATTAGAGGGCAATTGGAGAGCTCCACAACCAATGGAGGAAGGTCTGGATTCTTCAATTCCATCACACTCCGGCCTGGTGATTTTTGTGGAGAGGAATTGTTGACATGGGCATTGATGCCAAACTCAACCCTCAACCTACCTTCTTCTACACGCACTGTCAAAGCACTTTCTGAAGTTGAAGCTTTTGCACTACAGGCAGAGGATCTGAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAGCATGCGTTTAGGTACTATTCCCATCAATGGAGGACATGGGCTTCTTGCTTCATACAAGCTGCTTGGAGACGGTTTCAGAAAAGAAAGGCAACAAGAGAGTTATCCCTCAAAGAGGGTCTCTACTACCTGGAATTGCCTGAGAGGGATGGAAGTGGAAATTATGAGGATTATGAGATCGGGGAATCCTCAGGGAGTGTGAAAAAGGTTCAGAATCTTGGTGCAACTGTTTTGGCCTCAAAGTTTGCTGCCAATACAAAGAAAGGGAACCATAAGCTACAAGATCCTGTGCCCCAATTGTTCAAGCCAGATGAACCTGATTTTTCTCTAGACCATGAATCCATTTTCCTTCAAAGGAAACAAAGTAAGAACCACGACAGGCCCTCCAACCCCCTCCTCACCGACGACAGCCTCTCCATCATCATTGGCAAGCCAAACGGCGGCAGTGGCGAGTTCCTTTCCTCCTCCCTCGGCCGCTGGCAGAACCGCGACTCCAACACCAATCACGCCCTCATCCTCGCCTTCAAGACCATCGCCACCAAGTCTGATAGGTCGCTCACTCCCCCCACCTCTATCCCCCTACCCCGCCACCACCAAATCGCGGAGGCTTTTAAGGCCAGATCTAGTTTTCAAAGAGTTCTTGTAATTCAGATTCTTCTTCTTCAGATTCGTCATCTACCAAATACTCGAACGATCCAATGGAATATGATCGCGAACACGAGCCACCGTCAATTCCGTAAAGGAAAGAAAACTGTTACGGTGGGTAAAGGGTAG 2502 0.4784 MYRILSTPASKFRQFRRLRSRPKTATATEEEHAFQILWRYQILDPDSDIVAYWNRVFLVTSLLALFVDPLYFFLPTVGGPACLQADPKLSILVTILRSFADLFYVLHMLMKFRTAFVAPNSRIFGRGDLVMDAREIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIYPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFNCWKTQCEQENKSHTLSCFSSYLDCNSLNLPDRQYWLNITHVISRCDAKSKINIKYKFGMFADAFLNDVVTSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIVLCIAGLVLFSLLIGNMQTYLSSMSVRLEEWRIRKRDTEEWMRHRQLPQDLQERVRRFVQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWASCFIQAAWRRFQKRKATRELSLKEGLYYLELPERDGSGNYEDYEIGESSGSVKKVQNLGATVLASKFAANTKKGNHKLQDPVPQLFKPDEPDFSLDHESIFLQRKQSKNHDRPSNPLLTDDSLSIIIGKPNGGSGEFLSSSLGRWQNRDSNTNHALILAFKTIATKSDRSLTPPTSIPLPRHHQIAEAFKARSSFQRVLVIQILLLQIRHLPNTRTIQWNMIANTSHRQFRKGKKTVTVGKG 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01824 833 CDD CAP_ED 452 583 IPR000595 -
Pumo5g01824 833 Pfam Cyclic nucleotide-binding domain 475 563 IPR000595 -
Pumo5g01824 833 SMART cnmp_10 452 583 IPR000595 -
Pumo5g01824 833 Gene3D Helix hairpin bin 376 443 - -
Pumo5g01824 833 SUPERFAMILY Voltage-gated potassium channels 44 374 - -
Pumo5g01824 833 FunFam Cyclic nucleotide-gated ion channel 1 450 568 - -
Pumo5g01824 833 Gene3D Jelly Rolls 450 570 IPR014710 -
Pumo5g01824 833 ProSiteProfiles cAMP/cGMP binding motif profile. 452 582 IPR000595 -
Pumo5g01824 833 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 684 - -
Pumo5g01824 833 FunFam Cyclic nucleotide-gated ion channel 1 379 443 - -
Pumo5g01824 833 SUPERFAMILY cAMP-binding domain-like 382 577 IPR018490 -
Pumo5g01824 833 Pfam Ion transport protein 52 379 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo5g01824 833 Gene3D - 59 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01824 Pumo-Chr5 50815163 50822050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01824 10 691 Ion Channels AT5G14870 67.229 0.0 995
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01824 K05391 - gmx:100802812 1338.94