Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01816 ATGGGAGTCCACGGTCTCTGGGAACTACTTGCCCCCGTCGGTCGCCGCGTCTCCGTGGAAACCCTCGCCGGAAAAACCCTAGCCGTTGATGCAAGCATATGGATGGTGCAGTTTGTGAAAGCGATGCGCGACGAGAAGGGCGAAATGGTTCGCAACGCCCATTTGCTGGGCTTCTTCCGTCGCATTTGCAAGCTTCTGTTCCTCCGTACCAAGCCGGTCTTCGTCTTCGACGGCGGGACCCCTGCCCTCAAGCGCCGCACCGTCATCGCACGCCGCCGCCAGCGCGAAAACGCCCAAGCCAAAGTCCGCAAAACCGCCGAGAAATTGCTGCTCAATCATTTAAAGGCACTAAGGTTGAAGGAACTGGCTGATGATATAAAGAGCCAGAGGACGAAGCAGAATAGTGATAAGGGTCAGAAAAAATCTAAGCAGAAGGACTTTGTTGGTAGTGATTTAGGAGGAAGTCATGTGAAAGAGCTAGATGAAATGTCTGCGGCTAAATATGCAGCTAAGGAGGACGGAAATTCTTCACAGGCAACAATATCGACAAGTTACAACCAGGAGGAACTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGGAATACATGCCAGAAAAGGAATGCCGTCTATTGTAATTAATTCTTCAGAGGAGGAACGTGATGCAGACGAACAGATTATATTGCCATCAGTAAATGCAGAAGTTGATATAGCTGTATTAGCTGCCTTGCCACAGTCAATGCAACTTGATATTCTTGCACAGCTTAAAGGAAAGAAAACAGAAGGACTAGTAATGGAAGTTGACAACCAGAAACAACATGATGTCAATTATCTGGGCAAGGGTAAGGGGATTCTGCTCAGTGAAGCTGACATGGTAGGTTGTAGCTCCAGACGTGACAATGTTACATCAAGGAATGACAATCAAGACTCAATTGATGAAATGTTAGCAGCATCTATTGCTATGGAGGAAAATGAAGAGTTAGTAAATAATGCATCAACTTCTGTTGGGGCTTCCACTATTGAGGAAGAGGAAGTTGACTATGACGAAGATGAAGAGATGATACTGCCAGCTATGCATGGGGAAGTTGATCCAGCTGTTCTAGCCACATTGCCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGAGAGCGTTTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGACGGGAGATAGATGA 1221 0.466 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFVKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKELADDIKSQRTKQNSDKGQKKSKQKDFVGSDLGGSHVKELDEMSAAKYAAKEDGNSSQATISTSYNQEELDEMLAASIAAEENGIHARKGMPSIVINSSEEERDADEQIILPSVNAEVDIAVLAALPQSMQLDILAQLKGKKTEGLVMEVDNQKQHDVNYLGKGKGILLSEADMVGCSSRRDNVTSRNDNQDSIDEMLAASIAMEENEELVNNASTSVGASTIEEEEVDYDEDEEMILPAMHGEVDPAVLATLPPSMQLDLLVQMRERLIAENRQKYQKVKKTGDR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01816 406 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Pumo5g01816 406 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pumo5g01816 406 CDD PIN_XPG_RAD2 2 92 - -
Pumo5g01816 406 Gene3D - 1 172 - -
Pumo5g01816 406 FunFam DNA repair protein UVH3 1 147 - -
Pumo5g01816 406 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Pumo5g01816 406 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pumo5g01816 406 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pumo5g01816 406 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pumo5g01816 406 MobiDBLite consensus disorder prediction 127 147 - -
Pumo5g01816 406 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 264 - -
Pumo5g01816 406 Pfam Ubiquitin binding region 364 389 IPR025527 -
Pumo5g01816 406 Pfam Ubiquitin binding region 233 257 IPR025527 -
Pumo5g01816 406 MobiDBLite consensus disorder prediction 127 155 - -
Pumo5g01816 406 SMART xpgn3 1 98 IPR006085 GO:0004518
Pumo5g01816 406 Gene3D - 226 264 - -
Pumo5g01816 406 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Pumo5g01816 406 SUPERFAMILY PIN domain-like 2 106 IPR029060 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01816 1 100 Core DNA Replication Machinery Family AT5G26680 37.273 3.21e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01816 K10846 - gmx:100820295 700.664