Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01815 ATGGGGATGCGTATGACCCGTGATATACAAAGGAATTTGGATTTGATGAAGGAGATTGAGCAGGAAAGAGAACATGTGAACAAGGCTGCAAATATTGGAACAGTGAAAAATGCAGAGAATAATGGTCTATCAGAAAGTTCTGGGATCCAGCTTGTTGGTAAATCACAAGAGATGAATGTTGACTTAGTTGGAGAGAATGTGCAAAATGAACAAACAATGCTTGACAGGGATACATCGATAGAGATATCTTTTGAATATGATTGCAAGAATAAGTTTGCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCGGTGGCGATCTTTGGTGCTGATGATACTGCAGCAACAGAGCAACCTTCTCATTCTGATTCAGATTGTGATTGGGAAGAAGGAATTGTTGAAGGTAAGAGTAATGCTTTTCCTGAACACAATGAGGTAGAATTGAAGTCTTCTGTTGCAGACGAGGATAATAATAATGAAAGTGATGTAGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCACCTTACTGTCAGGAAAATCATCTCGAGGGTGGTTGGAGGAGGAGTCTGATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAATACAGGGGATGGGAAACTTAAATGCTTGTCAGCTGTAGAGCATTCAAATACACATGAGAACAAATTGGATCATTGTTTAGAACATGGTGATGATCTGTATTTTTCTGGCCCAGCAGATTTAAATGATAATGCTGGGTTCCTGAATAATCAAAATAATACGGAGGGATTTACTTTGGGTAGGGAAGACAATACTGAACAAAATGAATCACAAGAAATGGAAGACGGAGATAAAAAGCATGATTTTGTTTCTGGAAATAATGAACAAGCTTTCCATTTTCATGGAAGTCAGTCAAAGTCATCTGTGACATTTAATTCCAATAACACAGAGATATTGATCGACACACCTTGCAGACTGGATAGTCACTCTTGTTTTGAAGATTCAATATCAGATACAAATGTAATGACAAAGGACCAGGTCCCTGTGGTTGCAGAGCAATTATTGGATAAACATGATGATGGTAAAGTGTCTTTCTATTGTAACAATACATCCAAGGTTGATCCAGTAGGTGCAACTGAAGAGGAGAAAAAGAACTATATTCGTGAATCTGAACCATTGAGTAATCCTACTGACACTACCAAACCTGCTATTTTGATGGAGTCATCCTTGAAAGGATCAACAGAAGACCTTGATATTGAGCCAAAATTGCCTTCAGACAACAATAATGGAAATTTCTATGAGGAAAGGAATAGTAGCCTTGGCAATGATACGGTTAACACCCCGGGAGATTTTCCTGTTCATGCAGCTGAGGTTAGCTTGGAGGAAGAAATGCAAATTCTTGGTCAAGAATATATCAACCTAGAAAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAATCTGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGTTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTGACTGATGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTACAAAAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTGACCAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTGTGAATGCATTCCCTGAGGAAGATGGTCTCCTGAAATTCCGGCAATGGGTTGAGTCACCGGATCCCACCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCAAATACCAGAAAGAAAGGGTCAAAAGTTGAAGAAAAGATAAATTCCTCAAACTGCGATGTTAAAGAGTCGGCATCGGAGCAGAACATCCCCCATGCTCAGGAGCAAAACGAGTTGCCAGATTACATCCAAGAAATAAAGCAAACTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGAAACGGTTATATCTGCTTACTATTCTCCACATGTTGATAAATCAACTGAGCCGTTCTCACGGGGGAAGCCAGAACATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACTGGCCAGAAAGCGGATGAATTGCTATTACCTGTGTTAAAGGAGTATAACAAGCATGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAATGAAAGATTTGCAAAAATTCGTAGCAAAAGAATTAAGAAAGCAGTAAAAGGAATCACTGGTAAGCAGCCTTCAGATTTGATAGATGATTCTGCAGAAGAGTTGTCCAATAGTAGGAAGACTGGGAGAGAACCCGAGGGTAGCACATTGGAGACTTCAAGGGGGACAGAGGAAAGTATTGAGGGTAGAAGGAAATTAAAAATAAAACAGTCAAGGAAAAGGAAGAATGATATTGTTGCTAAGGAGCAATCAAAGAAAATGAAAGTCAATGATGATCCCTCTTCAGCACCTGGTACATCTGAGATGGAGAACTTACAGCGAAGTATGCAGACAGAAGAAGAGCAGTGTGATGGTAAGGCATTGATTCAGAATAGAAGTGGCAGAGGAAGAGGTAGAGGTGTGGGAATAAAAAGAGGAAGGGATAAGGAAAGTCTCAGTTTTCAATCTTGTGAAACTGAAACCTCATCTGGTAGCAGTGACATTGATGATCATGGGCCAAGAGAGCATGTGGATAGAGTTCGAAAAGATGTGCGAAGGTCAACGCGATCTCGGAAACCAGTCAATTATTCTTTCGAAGACCCTGAAGATGAAGATGCTGATGATTCATTTGATCAGAACAATCAGACTGGTCCAATAGAAGAAAATTTATCTCATATTCATGGTGCATGTGAAGATGGTGCAACAGATTTCAGCATGGGTAAAGAATGCAGTGCAATGAATTTTCCTCTAAAGGAGAACTTGCCTACAGACTCTCTTGAGTCAGAAGGTTGGTTTCGCATGGATGCCGGTGAGATTGGTCATCCTGGTACTGGCAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGGTGAGACAGGTAACAAGCTGGATACAATTGATGATGTCAATACTGCTACAATGGATTATACTGCAGACTTTCCACACTGTTCTGATTGTTTGGATGAAGCTGACCATGATAAAAATAGTTCAGATATATTATTTTCTGGAACTGAAAAGCCTGAAAATGGGATACAAGGTGGAGGGGCCTCTTGTAAATTCAATAGAGAGCCAAATGACGTTGTAGATGCTAGTGGTTATGATCATTCTGATATAGGGGTCTTGAAACCAGAGAATGCTCATAACAATAGTGGAGCCTCCACTGGAGCTTTTAGTGCTATGCCGTTTTTGAGGAAAAGAAGGAAAAACTGA 3525 0.3983 MGMRMTRDIQRNLDLMKEIEQEREHVNKAANIGTVKNAENNGLSESSGIQLVGKSQEMNVDLVGENVQNEQTMLDRDTSIEISFEYDCKNKFANGEDDIFSSLVGGNPVAIFGADDTAATEQPSHSDSDCDWEEGIVEGKSNAFPEHNEVELKSSVADEDNNNESDVEWEEGDCDGANSTLLSGKSSRGWLEEESDLQEAIRRSLENTGDGKLKCLSAVEHSNTHENKLDHCLEHGDDLYFSGPADLNDNAGFLNNQNNTEGFTLGREDNTEQNESQEMEDGDKKHDFVSGNNEQAFHFHGSQSKSSVTFNSNNTEILIDTPCRLDSHSCFEDSISDTNVMTKDQVPVVAEQLLDKHDDGKVSFYCNNTSKVDPVGATEEEKKNYIRESEPLSNPTDTTKPAILMESSLKGSTEDLDIEPKLPSDNNNGNFYEERNSSLGNDTVNTPGDFPVHAAEVSLEEEMQILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTILGRLDAKSGSNTRKKGSKVEEKINSSNCDVKESASEQNIPHAQEQNELPDYIQEIKQTFFNKHRNVSKNWHIPSSFPSETVISAYYSPHVDKSTEPFSRGKPEHLVLRKLCWEKFGWTGQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQPSDLIDDSAEELSNSRKTGREPEGSTLETSRGTEESIEGRRKLKIKQSRKRKNDIVAKEQSKKMKVNDDPSSAPGTSEMENLQRSMQTEEEQCDGKALIQNRSGRGRGRGVGIKRGRDKESLSFQSCETETSSGSSDIDDHGPREHVDRVRKDVRRSTRSRKPVNYSFEDPEDEDADDSFDQNNQTGPIEENLSHIHGACEDGATDFSMGKECSAMNFPLKENLPTDSLESEGWFRMDAGEIGHPGTGNHDSSDDYLKMGGGFCLDGETGNKLDTIDDVNTATMDYTADFPHCSDCLDEADHDKNSSDILFSGTEKPENGIQGGGASCKFNREPNDVVDASGYDHSDIGVLKPENAHNNSGASTGAFSAMPFLRKRRKN 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 652 668 - -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 423 444 - -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 627 670 - -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 632 651 - -
Pumo5g01815 1174 Gene3D - 569 623 - -
Pumo5g01815 1174 Pfam XPG I-region 503 584 IPR006086 GO:0004518
Pumo5g01815 1174 SUPERFAMILY PIN domain-like 474 584 IPR029060 -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 411 444 - -
Pumo5g01815 1174 SMART xpgineu 500 569 IPR006086 GO:0004518
Pumo5g01815 1174 Coils Coil 456 490 - -
Pumo5g01815 1174 CDD PIN_XPG_RAD2 486 570 - -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 929 964 - -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 799 837 - -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 845 861 - -
Pumo5g01815 1174 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 1067 - -
Pumo5g01815 1174 SMART HhH_4 571 604 IPR008918 GO:0003677|GO:0003824
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 1148 1174 - -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 1108 1129 - -
Pumo5g01815 1174 FunFam DNA repair protein UVH3 450 568 - -
Pumo5g01815 1174 ProSitePatterns XPG protein signature 2. 503 517 IPR019974 GO:0016788
Pumo5g01815 1174 Gene3D - 453 568 - -
Pumo5g01815 1174 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 574 589 IPR006084 -
Pumo5g01815 1174 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 499 516 IPR006084 -
Pumo5g01815 1174 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 520 540 IPR006084 -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 270 290 - -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 787 988 - -
Pumo5g01815 1174 FunFam DNA repair protein UVH3 569 626 - -
Pumo5g01815 1174 CDD H3TH_XPG 572 716 - -
Pumo5g01815 1174 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 569 778 IPR036279 -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 153 178 - -
Pumo5g01815 1174 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01815 Pumo-Chr5 50598578 50605700 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01815 494 601 Core DNA Replication Machinery Family AT5G26680 36.937 6.74e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01815 K10846 - gmx:100820295 1996.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01815 5 50598578 50605700 Pumo5g01815 5 50598578 50605700 ECH