Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01810 ATGTCTTCACCTTCATCATCTGGTGCTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGATTCTGGCTGTTCTATTTTTCATCTCTGGCCTGCTCCACCTGCTTGTTAGATTTCTCATAAAGAACCCTTCTTCCTCAGCATCTGCTCAATCCAATAATAGGCACCAGGAAATTGCTACCTCTGATACTCTTCAGAGGCAGCTGCAACAGCTTTTCCATCTCCATGACTCTGGCCTGGACCAGGCTTTCATTGATGCCCTTCCTGTTTTCCAGTACAAGGAGATAAAGGGGTTGAAGGAGCCATTTGACTGTGCCGTTTGTCTCTGTGAGTTTTCTGAAAAAGATAAGCTCAGGTTGCTCCCTATGTGCAGCCATGCCTTTCATATCAGTTGTATAGACACCTGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGGGGGACACTCCTTACTCCAGGCTTTTCCGTTGAAAATCCGATGTTTGATTTTGATGATTTGAGGGATGATGAGGGCCGCCCCTGTAATGGAGAGAATGAATTCACAACTAGACACAAAATGGTTGAAAATGAAGAAACTGTGGTAGAGAAGGGGGTTTTCCCTGTGAGACTTGGCAAATTCAGAAGGCTTGATGTGGAGGCAGTGGAGGCTGGAGGAGAGACTAGTAGCAGTAATTTGGATGCTAGAAGATGTTACTCCATGGGATCTTACCAATATGTACTTGGCAACTCCGACCTGAGGATAACCTTGAGCCATGACCGACAAGGTCGTGATGCAAAGCTCGCGAAAGGAACAGAAAACTTGGAGAGGCTTTCACTTGAGGGGGATATTGAAGCAAAGAAGATAACTAGTGTCAGTAAAGGTGAGAGCTATTCTGTTTCCAAAATTTGGCAGTGGTCAAAGAAGGGAAAATTTTCCGTTTCTTCTGATGTCCATATGGTCATGCCATCTTCTCTTAACACTGATTTGCCTTGGATGAGAGAAACAGGAAGGACGTGA 996 0.4468 MSSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSASAQSNNRHQEIATSDTLQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSVENPMFDFDDLRDDEGRPCNGENEFTTRHKMVENEETVVEKGVFPVRLGKFRRLDVEAVEAGGETSSSNLDARRCYSMGSYQYVLGNSDLRITLSHDRQGRDAKLAKGTENLERLSLEGDIEAKKITSVSKGESYSVSKIWQWSKKGKFSVSSDVHMVMPSSLNTDLPWMRETGRT 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01810 331 SUPERFAMILY RING/U-box 83 152 - -
Pumo5g01810 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 296 - -
Pumo5g01810 331 SMART ring_2 104 145 IPR001841 -
Pumo5g01810 331 FunFam RING-H2 finger protein ATL46 66 151 - -
Pumo5g01810 331 Pfam Ring finger domain 103 146 IPR001841 -
Pumo5g01810 331 CDD RING-H2_EL5-like 103 146 - -
Pumo5g01810 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 151 IPR013083 -
Pumo5g01810 331 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01810 Pumo-Chr5 50321423 50322688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01810 2 303 C3H Transcription Factor Family AT2G18650 41.124 4.68e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01810 - - cave:132183306 495.738