Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01804 ATGTACCTGCTCCTGCTGAAACTGCTAATCTTCCTCATATGCACTTTTTCTCCATCTCTTTCCAGCTCCATGACGGAGCTTGACACTCTCATGGCCATCAGAGACTCTCTAGACCCAGAGAACCGTGTGTTGATCTCTTGGACCCCCCATTCGGACCCATGTAGCAGTGGCTCTTTCGAGGGTGTCGCTTGCAATGAGAAAGGTCTTGTTACCAATATTTCACTGCAAGGAAAGGGTCTCTCTGGAAGGATACCTGAAGCCGTGGCTGGTCTCAAGAGCTTGACGGGTCTCTACCTTCACTTCAATGCCCTCAATGGGATATTACCAAAGGAGATTGCCACTTTGACTGAGCTAAGTGATTTGTATCTCAATGTCAATAACCTCTCTGGTGATATCCCTCGTGAGATTGGGAATATGTCAAATCTTCAAGTTTTGCAGCTTTGTTATAACAAGTTTAATGGGAATATACCTACTGAACTTGGAAGGTTAAGGAAGCTCAGCGTTGTTGCACTGCAATATAATGAATTAAGTAGCGCAATTCCTGCGAGTTTGGGTGAACTGGAGACATTGGCGCGATTGGATCTGAGCTTCAATAGCCTTTTTGGTCCAATTCCGGTGACATTGGCTAATGCACCTAAACTGCAGAGTCTAGATATTCGAAACAATTCTCTCTCGGGCCGTGTCCCTACAGCTCTAGGAAGACTCAAAGGTGGGTTTCAGTACAGCAACAATCCTGGTTTATGTGGGACTGGATTTGTCCATTTAGGTTCTTGCAAAGCATCAAGCAGTTCAGACCCAGTAAGACCCGAACCATATGAACCTGGTGATATTTCCACCAAAGATCTTCCTGCATCAATTGAACAACCAAAACCTGAAAACTGCCGCGGTGCTCATTGTAAAAGGACATCAAAAATTGGCTTGGTCTTTGTGGTGATTGGAGTTATTGTTGCTTCATCTGCTGTTGCACTTTTTTTGCTCTTATGGCACCGTCGTCAGAAACAGAAAATCGGAAGTTCTGATAACCGGCTTGCTACTGACCAGACGACCAAGCAAGTGTGCCAGAAGAGTGCGTCTCCTCTTATAAGTTTGGAGTATTCTAATGGATGGGACCCATTAGCCAAAGGACGAAGTGGCTATTCCCAGGAAGTTCTGGAGAGCTTTATGTTTAATCTTGAAGAAGTAGAACGCGCAACTGATAGCTTCTCAGAGGTAAATTTATTGGGGAAGAGTAATTTTTCAGTTGCATACCGGGGGATGTTGAGAGATGGTTCTGTTGTGGTTATAAAATGCATTGCTAAGACAAGCTGCAAGTCTGATGAAGCTGAATTCTTGAAAGGTTTGAAGATATTGACCGCGCTAAGGCATGAAAATCTGGTTCGGTTGAGAGGGTTTTGCTGTTCAAAAGGCCGCGGGGAATGTTTTCTAATTTATGATTCTCTCTCAAATGGGAGTTTGTGGCAGTATCTTGATGTTAAGAGAAACAGTGGTAGGGTGCTTGAATGGCCCACCAGAATGTTCATCATTCGTGGTATTGCCAAAGGTATCGGTTATCTGCATAGGAAGAAAGGAAGCAATAAACATGGTGTAGTTCATCAGAATATATCAGTTGAAAATATACTTCTGGATGCTCGGTATAACGCTTTACTTGCAGATTCAGGAGTGCACAAGCTCCTTGCAGATGATGTTGTGTTTTCCTCCCTCAAAGCTAGTGCTGCCATGGGTTATCTGCCTCCAGAGTACACCACAACTGGTCGTTTGACCGAAAAGAGTGATGTGTATGCATTTGGAGTTATTGTTTTCCAGCTTCTCACAGGAAAATGTGATATTATTACTCAGTTAAATTGCCAACGAGTAGAAAGTGCTAGTTTGAAAGATATAGTTGACGAGAATCTTGAAGGGATGTTCTCAGAATCAGAGGCGACCAAGCTGAGAAGAGTTGCTTTGCTTTGCACCCTTGAATCCCCACATCTCCGACCATCTATGGACAATATAATGCAAGAACTGGGTGATAAACAGTAG 2019 0.4368 MYLLLLKLLIFLICTFSPSLSSSMTELDTLMAIRDSLDPENRVLISWTPHSDPCSSGSFEGVACNEKGLVTNISLQGKGLSGRIPEAVAGLKSLTGLYLHFNALNGILPKEIATLTELSDLYLNVNNLSGDIPREIGNMSNLQVLQLCYNKFNGNIPTELGRLRKLSVVALQYNELSSAIPASLGELETLARLDLSFNSLFGPIPVTLANAPKLQSLDIRNNSLSGRVPTALGRLKGGFQYSNNPGLCGTGFVHLGSCKASSSSDPVRPEPYEPGDISTKDLPASIEQPKPENCRGAHCKRTSKIGLVFVVIGVIVASSAVALFLLLWHRRQKQKIGSSDNRLATDQTTKQVCQKSASPLISLEYSNGWDPLAKGRSGYSQEVLESFMFNLEEVERATDSFSEVNLLGKSNFSVAYRGMLRDGSVVVIKCIAKTSCKSDEAEFLKGLKILTALRHENLVRLRGFCCSKGRGECFLIYDSLSNGSLWQYLDVKRNSGRVLEWPTRMFIIRGIAKGIGYLHRKKGSNKHGVVHQNISVENILLDARYNALLADSGVHKLLADDVVFSSLKASAAMGYLPPEYTTTGRLTEKSDVYAFGVIVFQLLTGKCDIITQLNCQRVESASLKDIVDENLEGMFSESEATKLRRVALLCTLESPHLRPSMDNIMQELGDKQ 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01804 672 SUPERFAMILY L domain-like 24 236 - -
Pumo5g01804 672 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 154 669 IPR046959 -
Pumo5g01804 672 MobiDBLite consensus disorder prediction 261 295 - -
Pumo5g01804 672 Pfam Protein tyrosine and serine/threonine kinase 405 668 IPR001245 GO:0004672|GO:0006468
Pumo5g01804 672 ProSiteProfiles Protein kinase domain profile. 401 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01804 672 Gene3D Transferase(Phosphotransferase) domain 1 480 672 - -
Pumo5g01804 672 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
Pumo5g01804 672 Gene3D Phosphorylase Kinase; domain 1 376 478 - -
Pumo5g01804 672 Gene3D Ribonuclease Inhibitor 25 139 IPR032675 -
Pumo5g01804 672 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Pumo5g01804 672 Gene3D Ribonuclease Inhibitor 141 258 IPR032675 -
Pumo5g01804 672 Pfam Leucine Rich Repeat 213 233 IPR001611 GO:0005515
Pumo5g01804 672 FunFam Protein NSP-INTERACTING KINASE 2 373 479 - -
Pumo5g01804 672 FunFam Leucine-rich repeat receptor-like kinase 25 135 - -
Pumo5g01804 672 SUPERFAMILY Protein kinase-like (PK-like) 380 668 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01804 Pumo-Chr5 50019117 50022971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01804 4 514 Miscellaneous Gene Families AT4G22730 49.812 4.79e-170 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Pumo5g01804 PK_Tyr_Ser-Thr 9.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01804 - - var:108327466 1062.75