Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01797 ATGTCCAAGATTCGCGGATTCAACCTCAGGAAGCGCCTGATCCGGGTCTCGAAATGGATTTTCAGGAAGATCCGGATGCGGGCCCGACCCGAATACCATCGAATGGATGACTGTCCTAAGTCACCCATGGCGAAGCTACTCAAGTGGGGGCGCAAGTTGGCCTCCCACTTGAGGGTGGCATCCGGGTCGGACTATACCCGGCTAGGGCCTGACCCGGATCCGAGTGTTCCAAAGGTGCACCGTGTTCTGGTGCCGGTAATATACTTCAATCACCCTTTGTTCGGGGAATTGCTGAAGGAGGCAGAGAAGGAGTTCGGGTTCCACCAAGAAGGGGGAATAACCATCCCGTGCCGGGTCACCGAGTTTGAACGGGTCAAGACCCGAATCGCATCCGGATCTCGCAGGAGCACCCGTCCAAAAAGATTGGCCTGGCGCTGA 438 0.5685 MSKIRGFNLRKRLIRVSKWIFRKIRMRARPEYHRMDDCPKSPMAKLLKWGRKLASHLRVASGSDYTRLGPDPDPSVPKVHRVLVPVIYFNHPLFGELLKEAEKEFGFHQEGGITIPCRVTEFERVKTRIASGSRRSTRPKRLAWR 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01797 145 Pfam Auxin responsive protein 79 126 IPR003676 GO:0009733
Pumo5g01797 145 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 77 124 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01797 Pumo-Chr5 49814022 49817341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01797 77 122 Calmodulin-binding Proteins AT5G20810 50.000 3.86e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01797 K14488 - gmx:100783436 233.032