Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01792 ATGTTCGTTTCTTCGTCATCACACGTTCCCCGTTGGCTTCAAGTCCTCCTAACGGAGAAGTTCTACAACGCTTGCATAATTCACGAAGAGGCCAAGAAGAACGAGAAGAACGTGTATTGCTTGGATTGTTGCATCAGCCTCTGCCCTCACTGTTTGCCCCCTCACCGCTCTCATAGACTCTTGCAGATTAGAAGATATGTGTATCACGATGTTATAAGGTTGGATGACGCTGCAAAGTTAATTGACTGCACTTCTGTTCAATCCTACACAACCAACAGCGCAAAAGTGGTATTTTTAAACCAAAGGCCACAGACAAGGAACTTCAGAGGCTCCGGCAATTTCTGCAGCACCTGTGACAGAAGTCTGCAAGACCCATACCACTTCTGCTCCCTCTCTTGCAAGATCAATTATGTCATCAGAACGACGGGTTCTCTCTACGGCTACCTCTTCGAGTGCAACTACTTGCCGTTACCGGAATCTGGGCTTGATGACGGGTTGATGACCCCTGACTCGGTTCTCGAACCCGCCGGTTCGGCCCGAACCTCGTCCGGTTCGGGTGGGTACGGTGGGGTGGATTGCAGAACCACTTTAGCTTGCACTGCAACCACTGAGATTGTGAGGAAGAAGAGGACCGGCGGCTCCGCTTTCCGGCCACCGTGCCGGCCGGCGTGCTCGCCGGTGTCGGAAATCTCGGCGGGTCTCATGAACCGGAGGAAAGGGAACCCCCAGCGGGCCCCACTGTATTGA 747 0.5288 MFVSSSSHVPRWLQVLLTEKFYNACIIHEEAKKNEKNVYCLDCCISLCPHCLPPHRSHRLLQIRRYVYHDVIRLDDAAKLIDCTSVQSYTTNSAKVVFLNQRPQTRNFRGSGNFCSTCDRSLQDPYHFCSLSCKINYVIRTTGSLYGYLFECNYLPLPESGLDDGLMTPDSVLEPAGSARTSSGSGGYGGVDCRTTLACTATTEIVRKKRTGGSAFRPPCRPACSPVSEISAGLMNRRKGNPQRAPLY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01792 248 CDD Bbox2 25 63 - -
Pumo5g01792 248 ProSiteProfiles Zinc finger B-box type profile. 20 63 IPR000315 GO:0008270
Pumo5g01792 248 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 247 - -
Pumo5g01792 248 Pfam PLATZ transcription factor 64 135 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01792 Pumo-Chr5 49423513 49425491 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Pumo5g01792 PLATZ 2.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01792 - - pvu:PHAVU_008G142900g 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01792 5 49423513 49425491 Pumo5g01792 5 49423513 49425491 ECH