Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo5g01780 | ATGAATTCTTCTTCTGGCTACCAACAACAACAACATGGCTATGACCCATCTCAAACTCAAACTCCACCCTATGATCAATCATCACAACCGTATTATCCCTATAATTATGCACAAGATAACCAACCCCAATTCCAACAAGACCCCAACTCGATCCCAATAGCCCCTGAACAGTCTCATTCTGCTGAACCCTCACAAACCCACGCGCCGAACCCGCCCCAGGCTGCACCGGTTACCGGTTCGCTCAACCCTGCGGGAGCTCTCGCGCAGCTTGTGGGGAACCTTGACGGGGTGCCCAGGGAACTGATTGGGCCATCTCAATACAGAGGTGCAGGTCGCAGGGGTGGTAGACCATTTAGAGGCTATGGTCGTGGGCCTCGTGGCCGATTCAATCACCACCGTGGTAGGGGACGTGGCAGGGGTGGTGATGGCAGACAGTTCTCATCTCATTCTTCTGAAGTCACTATTGCTAATGTAGCAGATGCACCTCCAGATGCACCTGCTGTTGATGGGACCACTTCAGTGATGCAACCATCATCAGTCTCTGGGCCCTCATCATTACCTAATCCAGCACAAGTTCCATCTGCACCATTGCAGTCACCACCACGTAAGTTATGGTGTGAAATTTGTAAGGCTGAGTGCAATACACCAGAAATGATGGAGCAGCATAAGAATGGAAAGCGGCATAGGAAGAACTTGCTTGTGCATGAAGAAGTACAGAGACTCAAAGCTCAAAATGGACAACAAGGTGGAAATATTTCTACTTCTCAATCGAATTTAACAATCCAACCTGAGAACGTTCAGGAATCTGAGAACAAAGCATTACCAGAAGGAAATATGGGTTCTGAAGCTACAGCTGATAATCACAATGATGAAACTGAGCTTCAGAATAACGTGGAAGGCGTTTCTGAAGTTCAAACTGAAGAGCCTCAGGAGGAACCTAGAGATGACTCTGCCATACAGGGTCATGGATTCAAGCGTAAGATGAGAGGATGCAGAGGAGGTAAATACATGAGGAGTGATGATGGGTCAAGAAAATCATTGGAACCTCCAAAGCCTAAGCAAGTTACATATTTCATATGTGAGTTGTGCAATGTTAAATGTGATTCCCAGGTTGTCTACAATAGTCATTTGACAGGAAAAAAGCACTTGTCAAATTTCAAGCGTGTCCATGGCTACCAGCCTTTGAATGGAGAAGCAGCGATTCAACCACTTCAGCCTCCTGATATCAATGCTCTGTCAAATGCAAATAATTTTCCGGTCCAACAGGGTGTTAGTGTCCCTATAAGCGTCAATGATCCACGAAACCTTCTGGCTCAGCTCCTGATGAATGTGTTATCTAATGTCCAAGTACCAGCAACAGCACCACTGTCAGGTCCTGTGGCCGCTCAGATACAAGTGCCAACATTGATGGCTGGATCAAGTCATGACCCCCTATCTCAAAATTTGTCACAGACACAAGTCTCAGATTCCTTGGCACATTTTGAGAGAGAAAATCCTACTGGAGAAACAAAAGATCAGATGTCATCTGTCACATTGCAACTGGATGAGACCGCTGGTTCAAGCAATAATGGTAACATTGAAACTGCAGATGGAACACCTGCAAAGGAAGAAAATAAACAAGTACCTTCATAA | 1632 | 0.4602 | MNSSSGYQQQQHGYDPSQTQTPPYDQSSQPYYPYNYAQDNQPQFQQDPNSIPIAPEQSHSAEPSQTHAPNPPQAAPVTGSLNPAGALAQLVGNLDGVPRELIGPSQYRGAGRRGGRPFRGYGRGPRGRFNHHRGRGRGRGGDGRQFSSHSSEVTIANVADAPPDAPAVDGTTSVMQPSSVSGPSSLPNPAQVPSAPLQSPPRKLWCEICKAECNTPEMMEQHKNGKRHRKNLLVHEEVQRLKAQNGQQGGNISTSQSNLTIQPENVQESENKALPEGNMGSEATADNHNDETELQNNVEGVSEVQTEEPQEEPRDDSAIQGHGFKRKMRGCRGGKYMRSDDGSRKSLEPPKPKQVTYFICELCNVKCDSQVVYNSHLTGKKHLSNFKRVHGYQPLNGEAAIQPLQPPDINALSNANNFPVQQGVSVPISVNDPRNLLAQLLMNVLSNVQVPATAPLSGPVAAQIQVPTLMAGSSHDPLSQNLSQTQVSDSLAHFERENPTGETKDQMSSVTLQLDETAGSSNNGNIETADGTPAKEENKQVPS | 543 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo5g01780 | 543 | SMART | ZnF_U1_5 | 355 | 389 | IPR003604 | GO:0003676|GO:0008270 | |
| Pumo5g01780 | 543 | SMART | ZnF_U1_5 | 201 | 235 | IPR003604 | GO:0003676|GO:0008270 | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 171 | 188 | - | - | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 333 | 348 | - | - | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 307 | 323 | - | - | |
| Pumo5g01780 | 543 | SUPERFAMILY | beta-beta-alpha zinc fingers | 344 | 389 | IPR036236 | - | |
| Pumo5g01780 | 543 | Gene3D | Classic Zinc Finger | 191 | 235 | - | - | |
| Pumo5g01780 | 543 | Gene3D | Classic Zinc Finger | 336 | 388 | - | - | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 503 | 529 | - | - | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 498 | 543 | - | - | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 242 | 350 | - | - | |
| Pumo5g01780 | 543 | Pfam | Zinc-finger of C2H2 type | 205 | 228 | - | - | |
| Pumo5g01780 | 543 | Pfam | Zinc-finger of C2H2 type | 358 | 382 | - | - | |
| Pumo5g01780 | 543 | PANTHER | OS06G0651300 PROTEIN-RELATED | 9 | 430 | - | - | |
| Pumo5g01780 | 543 | SMART | c2h2final6 | 358 | 382 | IPR013087 | - | |
| Pumo5g01780 | 543 | SMART | c2h2final6 | 204 | 228 | IPR013087 | - | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 242 | 274 | - | - | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
| Pumo5g01780 | 543 | SUPERFAMILY | beta-beta-alpha zinc fingers | 185 | 232 | IPR036236 | - | |
| Pumo5g01780 | 543 | MobiDBLite | consensus disorder prediction | 97 | 200 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo5g01780 | Pumo-Chr5 | 49157711 | 49164615 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo5g01780 | 358 | 382 | C2H2 Transcription Factor Family | AT5G61190 | 68.000 | 2.69e-06 | 48.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo5g01780 | - | - | gmx:102666037 | 825.854 |