Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g01778 | ATGGATAGGCACAAGTGCAAGCTTTGCTTCAGGAGCTTCGCCAATGGGAGGGCCTTGGGGGGTCACATGCGCTCCCACATGATGAACCTTCCTCTCTCGAAGCCCGAAGAATTCGCCTCATCGCGAACCATCCAACTCAGCTTCGAAGCCGAGTCAGCTTCTTCATCGTCGTCATCTGAAGATGACGACGATGATGATGAAGAAAAGGGTCTCTGTTACGGCCTCAGAGAGAACCCCAAGCGAAACATTCGCCTCGTGGATCCCGAATTTTCGTTCGCAGCAGCAGCAGCAGACACCGGCTCGGTGATCCTCCACGACAGAGAGAGCGAGTCCGAGTCATCGAAAAACAACCCAACTCGTAGTAGATCCAAAAGGCCTTGGAATAATAATAACAACTATTATTATTATGACAACAATATTAACAAAGATACTACCACCAACAGCAGCATCAAAAAGCAAGGTCTCGGATTTAAGCACGAAGCGAAGATGACGAAGAAGAGCAAGACAGACTCGTGGGTGGACCACGAGCCTGCTAGCTCGGTCTCCGACGCAACCACCGAGGAGGACGTGGCATTTTGTCTCATGATGCTGTCGAGGGACAAATGGAAGCGACAAAGGGATCAAGATCAACACCATATCGTGGAACCGGAAGGTCAATACGAGGAGGAAGAAGAAGAGGACGAAGACGAGGAGGAGGAAGAAGATGAAGCCTTCGAGGAGAGCGAGGAATCACAAGAGACGATGAAACTCTGCAAGAACAGAGTACGAGGAAGGTACAAATGCGACACCTGCAACAAGGTGTTCCGATCCTACCAAGCATTGGGGGGTCACAGAGCGAGTCACAAGAAGATCAAAGTGAATGTAAGATTGGACGGCGGTGGTGGCGGCGGCGGTGGTAATAGTAGAGAACAAGAACTTGAGTATAACAGCAAGAAGAAGAGTGGAACATGTGGTGGTGTTGTGGAAAAGAAAATTCACGAGTGCCCTGTTTGTTTCAGAGTCTTTGCTTCGGGTCAAGCACTTGGGGGACACAAGAGAACCCATGTTACTGGGTCGTCAGCAGCCATATCAGTTCCATCAAGTTCCGCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTCCCTGCTCCAATCGACGAAGACGATGTTAGCCAAATCGAGAACTCTGCTGTTTCCGATGCAGAATTCGTCAAAACCCATTAG | 1203 | 0.4946 | MDRHKCKLCFRSFANGRALGGHMRSHMMNLPLSKPEEFASSRTIQLSFEAESASSSSSSEDDDDDDEEKGLCYGLRENPKRNIRLVDPEFSFAAAAADTGSVILHDRESESESSKNNPTRSRSKRPWNNNNNYYYYDNNINKDTTTNSSIKKQGLGFKHEAKMTKKSKTDSWVDHEPASSVSDATTEEDVAFCLMMLSRDKWKRQRDQDQHHIVEPEGQYEEEEEEDEDEEEEEDEAFEESEESQETMKLCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVRLDGGGGGGGGNSREQELEYNSKKKSGTCGGVVEKKIHECPVCFRVFASGQALGGHKRTHVTGSSAAISVPSSSAKFGNSFIDLNLPAPIDEDDVSQIENSAVSDAEFVKTH | 400 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g01778 | 400 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 259 | 286 | IPR013087 | - | |
Pumo5g01778 | 400 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
Pumo5g01778 | 400 | SMART | c2h2final6 | 326 | 348 | IPR013087 | - | |
Pumo5g01778 | 400 | SMART | c2h2final6 | 259 | 281 | IPR013087 | - | |
Pumo5g01778 | 400 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 328 | 348 | IPR013087 | - | |
Pumo5g01778 | 400 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 399 | IPR044303 | GO:0006355 | |
Pumo5g01778 | 400 | Coils | Coil | 220 | 241 | - | - | |
Pumo5g01778 | 400 | Gene3D | Classic Zinc Finger | 256 | 348 | - | - | |
Pumo5g01778 | 400 | MobiDBLite | consensus disorder prediction | 165 | 184 | - | - | |
Pumo5g01778 | 400 | Pfam | C2H2-type zinc finger | 326 | 348 | - | - | |
Pumo5g01778 | 400 | Pfam | C2H2-type zinc finger | 258 | 283 | - | - | |
Pumo5g01778 | 400 | Pfam | C2H2-type zinc finger | 3 | 27 | - | - | |
Pumo5g01778 | 400 | SUPERFAMILY | beta-beta-alpha zinc fingers | 258 | 348 | IPR036236 | - | |
Pumo5g01778 | 400 | MobiDBLite | consensus disorder prediction | 204 | 249 | - | - | |
Pumo5g01778 | 400 | MobiDBLite | consensus disorder prediction | 103 | 119 | - | - | |
Pumo5g01778 | 400 | MobiDBLite | consensus disorder prediction | 219 | 242 | - | - | |
Pumo5g01778 | 400 | MobiDBLite | consensus disorder prediction | 204 | 218 | - | - | |
Pumo5g01778 | 400 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 261 | 281 | IPR013087 | - | |
Pumo5g01778 | 400 | MobiDBLite | consensus disorder prediction | 49 | 74 | - | - | |
Pumo5g01778 | 400 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 326 | 353 | IPR013087 | - | |
Pumo5g01778 | 400 | MobiDBLite | consensus disorder prediction | 103 | 131 | - | - | |
Pumo5g01778 | 400 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
Pumo5g01778 | 400 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g01778 | Pumo-Chr5 | 49116868 | 49118357 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g01778 | 1 | 386 | C2H2 Transcription Factor Family | AT3G60580 | 41.919 | 1.80e-66 | 211 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo5g01778 | zf-C2H2_6 | 3.2e-13 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g01778 | - | - | gmx:100799313 | 546.969 |