Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01778 ATGGATAGGCACAAGTGCAAGCTTTGCTTCAGGAGCTTCGCCAATGGGAGGGCCTTGGGGGGTCACATGCGCTCCCACATGATGAACCTTCCTCTCTCGAAGCCCGAAGAATTCGCCTCATCGCGAACCATCCAACTCAGCTTCGAAGCCGAGTCAGCTTCTTCATCGTCGTCATCTGAAGATGACGACGATGATGATGAAGAAAAGGGTCTCTGTTACGGCCTCAGAGAGAACCCCAAGCGAAACATTCGCCTCGTGGATCCCGAATTTTCGTTCGCAGCAGCAGCAGCAGACACCGGCTCGGTGATCCTCCACGACAGAGAGAGCGAGTCCGAGTCATCGAAAAACAACCCAACTCGTAGTAGATCCAAAAGGCCTTGGAATAATAATAACAACTATTATTATTATGACAACAATATTAACAAAGATACTACCACCAACAGCAGCATCAAAAAGCAAGGTCTCGGATTTAAGCACGAAGCGAAGATGACGAAGAAGAGCAAGACAGACTCGTGGGTGGACCACGAGCCTGCTAGCTCGGTCTCCGACGCAACCACCGAGGAGGACGTGGCATTTTGTCTCATGATGCTGTCGAGGGACAAATGGAAGCGACAAAGGGATCAAGATCAACACCATATCGTGGAACCGGAAGGTCAATACGAGGAGGAAGAAGAAGAGGACGAAGACGAGGAGGAGGAAGAAGATGAAGCCTTCGAGGAGAGCGAGGAATCACAAGAGACGATGAAACTCTGCAAGAACAGAGTACGAGGAAGGTACAAATGCGACACCTGCAACAAGGTGTTCCGATCCTACCAAGCATTGGGGGGTCACAGAGCGAGTCACAAGAAGATCAAAGTGAATGTAAGATTGGACGGCGGTGGTGGCGGCGGCGGTGGTAATAGTAGAGAACAAGAACTTGAGTATAACAGCAAGAAGAAGAGTGGAACATGTGGTGGTGTTGTGGAAAAGAAAATTCACGAGTGCCCTGTTTGTTTCAGAGTCTTTGCTTCGGGTCAAGCACTTGGGGGACACAAGAGAACCCATGTTACTGGGTCGTCAGCAGCCATATCAGTTCCATCAAGTTCCGCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTCCCTGCTCCAATCGACGAAGACGATGTTAGCCAAATCGAGAACTCTGCTGTTTCCGATGCAGAATTCGTCAAAACCCATTAG 1203 0.4946 MDRHKCKLCFRSFANGRALGGHMRSHMMNLPLSKPEEFASSRTIQLSFEAESASSSSSSEDDDDDDEEKGLCYGLRENPKRNIRLVDPEFSFAAAAADTGSVILHDRESESESSKNNPTRSRSKRPWNNNNNYYYYDNNINKDTTTNSSIKKQGLGFKHEAKMTKKSKTDSWVDHEPASSVSDATTEEDVAFCLMMLSRDKWKRQRDQDQHHIVEPEGQYEEEEEEDEDEEEEEDEAFEESEESQETMKLCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVRLDGGGGGGGGNSREQELEYNSKKKSGTCGGVVEKKIHECPVCFRVFASGQALGGHKRTHVTGSSAAISVPSSSAKFGNSFIDLNLPAPIDEDDVSQIENSAVSDAEFVKTH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01778 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
Pumo5g01778 400 SMART c2h2final6 4 26 IPR013087 -
Pumo5g01778 400 SMART c2h2final6 326 348 IPR013087 -
Pumo5g01778 400 SMART c2h2final6 259 281 IPR013087 -
Pumo5g01778 400 ProSitePatterns Zinc finger C2H2 type domain signature. 328 348 IPR013087 -
Pumo5g01778 400 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 399 IPR044303 GO:0006355
Pumo5g01778 400 Coils Coil 220 241 - -
Pumo5g01778 400 Gene3D Classic Zinc Finger 256 348 - -
Pumo5g01778 400 MobiDBLite consensus disorder prediction 165 184 - -
Pumo5g01778 400 Pfam C2H2-type zinc finger 326 348 - -
Pumo5g01778 400 Pfam C2H2-type zinc finger 258 283 - -
Pumo5g01778 400 Pfam C2H2-type zinc finger 3 27 - -
Pumo5g01778 400 SUPERFAMILY beta-beta-alpha zinc fingers 258 348 IPR036236 -
Pumo5g01778 400 MobiDBLite consensus disorder prediction 204 249 - -
Pumo5g01778 400 MobiDBLite consensus disorder prediction 103 119 - -
Pumo5g01778 400 MobiDBLite consensus disorder prediction 219 242 - -
Pumo5g01778 400 MobiDBLite consensus disorder prediction 204 218 - -
Pumo5g01778 400 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Pumo5g01778 400 MobiDBLite consensus disorder prediction 49 74 - -
Pumo5g01778 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 326 353 IPR013087 -
Pumo5g01778 400 MobiDBLite consensus disorder prediction 103 131 - -
Pumo5g01778 400 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pumo5g01778 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01778 Pumo-Chr5 49116868 49118357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01778 1 386 C2H2 Transcription Factor Family AT3G60580 41.919 1.80e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g01778 zf-C2H2_6 3.2e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01778 - - gmx:100799313 546.969