Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01774 ATGGCTCTTACACTTCAACGTGCATTATCTCAACTACTCATCCTAGTAGCTATACTCTCAATATTCCTAGTGATCCCTTCCTTTTGCTTCAACCCCAAAAAGCTTTATAATGCTTCATATTATTCCCCATCTGGTTCAGATTGGTCTCCTGCAGTGGCCACTTGGTATGGACCTGCCAATGGAGATGGAAGTGAAGGTGGAGCTTGTGGATATGGCAACGCTGTTGGGCAACCTCCATTCTCTTCTTTAATATCCGCGGGAAGCCCTCTTATATATGACTCGGGCAAAGGGTGTGGTTCTTGTTATGAGGTGAAGTGCACAGGGAATTCTGCATGCTCAGGTAACCCCGTGAAAGTAGTCATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTCAATATCATTTTGACTTGAGTGGCAGTGCTTTTGGAGCAATGGCAGTTTCAGGTCAAGATGGTAATCTACGCGATGCAGGAAAAATAAACATTCAGCACAGAAGAATTGAATGCAACTATCCCGGTATGTCAATAGCTTTCCACGTGGACTCTGGCTCAAACCAAGAATATTTTGCTGCCTTGGTTGAATATGAGGATGGGGATGGTGACCTTGCCAGGGTTGAACTCAAGGAAGCACTTGATTCAGGGTCATGGGACTCCATGCAGCAATCATGGGGTGCAGTTTGGAAACTTGACAAGGGCTCATCACTGAAAGCACCATTCTCCATCAGGCTAACCACACTTGAGTCTGGAAAGACTATTGTGGCCAACAATGTGATCCCTGCAGGGCTTTATAATGCTTCATATTATTCCCCATCTCGTTCACATTGGTCACCTGCAGTGGCCACTTGGTATGGACCTGCCAAAGGAGATGGAAGTGAAGGTGGAGCTTGTGGATATGGCAACGCTGTTGGCCAACCTCCATTCTCTTCTTTAATATCTGCGGGAAGCCCTCTTATATATGACTCCGGCAAAGGGTGTGGTTCTTGTTATGAGGTGAAGTGCACAGGGAATTCTGCATGCTCAGGCAAGCCCGTGAAAGTAGTCATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTCAATATCATTTTGACTTGAGTGGCAGTGCTTTTGGAGCAATGGCAGTTTCAGGCAAAGATGGGAATCTACGCAATGCAGGGAAAATAAAAATTTGGCACAGAAGAATTAAATGCAACTATCCTGGTAGGTCAATAGCTTTCCACGTGGACTCTGGCTCTAACCAAGAATATTTTGCTACCTTGGTTGAATATGAGGATGGGGATGGTGACCTTGCCAAGGTTGAACTCAAGGAAGCACTTGATTCAGGGTCATGGGACTCCATGCAGCAATCATGGGGTGCAGTTTGGAAACTTGACAAGGGGTCACCACTGAGAGCACCATTCTCTATCAGGCTAACCACACTTGAGTCTGGAAAGACTATTGTAGCCAACAATGTGATCCCTGCAGGGTGGACTCCTGGTCAGACTTACAGATAA 1497 0.4649 MALTLQRALSQLLILVAILSIFLVIPSFCFNPKKLYNASYYSPSGSDWSPAVATWYGPANGDGSEGGACGYGNAVGQPPFSSLISAGSPLIYDSGKGCGSCYEVKCTGNSACSGNPVKVVITDECAGCGSDAQYHFDLSGSAFGAMAVSGQDGNLRDAGKINIQHRRIECNYPGMSIAFHVDSGSNQEYFAALVEYEDGDGDLARVELKEALDSGSWDSMQQSWGAVWKLDKGSSLKAPFSIRLTTLESGKTIVANNVIPAGLYNASYYSPSRSHWSPAVATWYGPAKGDGSEGGACGYGNAVGQPPFSSLISAGSPLIYDSGKGCGSCYEVKCTGNSACSGKPVKVVITDECAGCGSDAQYHFDLSGSAFGAMAVSGKDGNLRNAGKIKIWHRRIKCNYPGRSIAFHVDSGSNQEYFATLVEYEDGDGDLAKVELKEALDSGSWDSMQQSWGAVWKLDKGSPLRAPFSIRLTTLESGKTIVANNVIPAGWTPGQTYR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01774 498 CDD DPBB_EXPB_N 276 398 - -
Pumo5g01774 498 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
Pumo5g01774 498 Pfam Expansin C-terminal domain 177 260 IPR007117 -
Pumo5g01774 498 Pfam Expansin C-terminal domain 405 488 IPR007117 -
Pumo5g01774 498 Gene3D - 268 398 IPR036908 -
Pumo5g01774 498 Gene3D - 34 170 IPR036908 -
Pumo5g01774 498 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 294 403 IPR007112 -
Pumo5g01774 498 SUPERFAMILY Barwin-like endoglucanases 38 174 IPR036908 -
Pumo5g01774 498 Gene3D - 171 267 IPR036749 -
Pumo5g01774 498 Gene3D - 399 498 IPR036749 -
Pumo5g01774 498 Pfam Lytic transglycolase 85 164 IPR009009 -
Pumo5g01774 498 Pfam Lytic transglycolase 313 390 IPR009009 -
Pumo5g01774 498 SUPERFAMILY Barwin-like endoglucanases 267 402 IPR036908 -
Pumo5g01774 498 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 271 IPR007117 -
Pumo5g01774 498 SUPERFAMILY PHL pollen allergen 403 498 IPR036749 -
Pumo5g01774 498 SUPERFAMILY PHL pollen allergen 177 269 IPR036749 -
Pumo5g01774 498 PANTHER EXPANSIN-B3 275 498 - -
Pumo5g01774 498 CDD DPBB_EXPB_N 48 170 - -
Pumo5g01774 498 PRINTS Major pollen allergen Lol pI signature 314 325 IPR005795 GO:0005576|GO:0019953
Pumo5g01774 498 PRINTS Major pollen allergen Lol pI signature 375 390 IPR005795 GO:0005576|GO:0019953
Pumo5g01774 498 PRINTS Major pollen allergen Lol pI signature 407 422 IPR005795 GO:0005576|GO:0019953
Pumo5g01774 498 PRINTS Major pollen allergen Lol pI signature 423 438 IPR005795 GO:0005576|GO:0019953
Pumo5g01774 498 PRINTS Major pollen allergen Lol pI signature 334 344 IPR005795 GO:0005576|GO:0019953
Pumo5g01774 498 PRINTS Major pollen allergen Lol pI signature 454 471 IPR005795 GO:0005576|GO:0019953
Pumo5g01774 498 SMART dpbb_1 312 393 IPR007112 -
Pumo5g01774 498 SMART dpbb_1 84 165 IPR007112 -
Pumo5g01774 498 PRINTS Expansin/Lol pI family signature 386 402 IPR007118 GO:0005576
Pumo5g01774 498 PRINTS Expansin/Lol pI family signature 293 311 IPR007118 GO:0005576
Pumo5g01774 498 PRINTS Expansin/Lol pI family signature 485 498 IPR007118 GO:0005576
Pumo5g01774 498 PRINTS Expansin/Lol pI family signature 275 290 IPR007118 GO:0005576
Pumo5g01774 498 PRINTS Expansin/Lol pI family signature 316 334 IPR007118 GO:0005576
Pumo5g01774 498 PRINTS Expansin/Lol pI family signature 445 459 IPR007118 GO:0005576
Pumo5g01774 498 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 416 498 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01774 Pumo-Chr5 48935773 48951328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01774 264 498 Expansin Gene Family AT1G65680 61.277 2.08e-104 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01774 - - gmx:548090 515.383