Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01771 ATGAGCCAGTGTGTTCCCAGTTGGGATGTCGATGACAACCCTCCACCCCCAAGAGTCTCTCTTCGCTCCAACTCCAATTCAACTGCCCCTGATGTTCCCATGTTGGACTACGAAGTTGCTGAACTGACATGGGAAAACGGACAACTTTCTATGCATGGCTTAGGGCTACCACGCGTGCCGGTAAAACCTCCCACAGCCGCTGCGAATAAGTACACGTGGGAGAAGCCTCGCGCAAATGGCACCTTGGAGTCCATAGTGAACCAAGCCACGAGCTTGCCCCATGGGGGCAAGCCAACTTTAAATGGTGACGGTGGTGGCGGTGGTGTTTACGGAAACTTCATGGTGCCGTGGTTCGACCCTCATGCCTCCGCTGCCGCCACGAACACCATGACGATGGACGCATTGGTGCCCTGCTCGAACCGCGAGCAGAGCAAGCAGGGCATGGAGTCGGCCCCCGGCACGTGCATGGTGGGGTGCTGCTCCACACGTGTGGGGTCTTGCTGCGGGGGGAAGGGGGCGAGGCACGAGGTGAGTGGGAGGGATCAGAGTGTGAGTGGGAGTGCCACGTTTGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGGGAGTTTGGTGTGGGTTTCACTTCCCCCTCCATCAACTCCCTCGAAAACACCAGCTCCGCTAAGCACTGCATCAAGACCACCACCGTAGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGGGGGAAGACGGGGATGAAAAGAAGAAAAAGAGAGCAAACGGAAAATCGTCGGTGTCCACTAAAAGGAGCAGAGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAAGTGCAGATGATGAATAGAATCAACATGTCATCGATGATGCTGCCATTGACCATGCAACAACAGCTTCAAATGTCTATGATGAATCCAATGGGCATGGGATTAGGGATGGGAATGGGGATGGGTATGGGAATGGGGATGGATATGAACTCCATGAACCGTGCTAACATCCCTGGCATGCCTCCAATCCTCCACCCTTCTGCCTTCATGCCTATGGCGGCCTCGTGGGATGCCGTCGCCGCCGCTGCCGGAGGCGGTGACCGACTTCAAGGGACTCCGGCCACCATGATGCCTGACCCTTTGTCCACATTTTTTGGATGCCAATCACAGCCCATGACCATGGATGCCTACAGTAGACTTGCTGCCATGTATCAGCAGCTGCATCAACCTCCTGCTTCTGGTTCCAAGAATTGA 1374 0.5371 MSQCVPSWDVDDNPPPPRVSLRSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPPTAAANKYTWEKPRANGTLESIVNQATSLPHGGKPTLNGDGGGGGVYGNFMVPWFDPHASAAATNTMTMDALVPCSNREQSKQGMESAPGTCMVGCCSTRVGSCCGGKGARHEVSGRDQSVSGSATFGRDSKHVTLDTCDREFGVGFTSPSINSLENTSSAKHCIKTTTVDDHDSVSHSKPVGEDGDEKKKKRANGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMNPMGMGLGMGMGMGMGMGMDMNSMNRANIPGMPPILHPSAFMPMAASWDAVAAAAGGGDRLQGTPATMMPDPLSTFFGCQSQPMTMDAYSRLAAMYQQLHQPPASGSKN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01771 457 Gene3D - 264 330 IPR036638 GO:0046983
Pumo5g01771 457 SMART finulus 275 324 IPR011598 GO:0046983
Pumo5g01771 457 CDD bHLH_AtPIF_like 269 330 IPR047265 -
Pumo5g01771 457 Coils Coil 275 295 - -
Pumo5g01771 457 MobiDBLite consensus disorder prediction 171 191 - -
Pumo5g01771 457 Pfam Helix-loop-helix DNA-binding domain 274 319 IPR011598 GO:0046983
Pumo5g01771 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Pumo5g01771 457 MobiDBLite consensus disorder prediction 232 258 - -
Pumo5g01771 457 MobiDBLite consensus disorder prediction 1 31 - -
Pumo5g01771 457 MobiDBLite consensus disorder prediction 232 285 - -
Pumo5g01771 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 331 IPR036638 GO:0046983
Pumo5g01771 457 FunFam transcription factor UNE10 isoform X1 264 329 - -
Pumo5g01771 457 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 455 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01771 Pumo-Chr5 48686111 48693316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01771 1 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 51.351 5.39e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g01771 HLH 6.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01771 - - gmx:100798775 746.117