Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01760 ATGACTAGGAAGAAGGTGGACCTTACATACATAACTAATGTCTCGAAGAGGAAGGCAACATTAAGTTTGATTAAGAAGATTGATGAAATTAGCATTCTTTGTGGGATTGAAGCATGTGCTATAATTTATACTCCAAATAATCCTCAGCCAGAGGTTTGGCCATCTGATTGGGGAGTCCAAAGTGTGCTTTCTAGGTTCAGGGGAGTGTCTGAACTAGAACAAAGCAAAAAAAAGTTGTGCCAAGAGAGCTTTTTGAGACAGAGGATCATCAAAGCCGAAATACAACTGAGGAAATTGAGGAATGAAATTAGGAAGAAAGAGCTGACCCTTCTCATGTTTCAATACCTCAATAGTAAGAACAATTTTGATAATGCCAACATGATTGATCTGAATGATATCTCAAACTTGATTGATATAAACTTGGAGGAAATAGAAAGGAAAATCAATATAAGCCAAGCCCAAGAGGTGAAACCAGTTGTTGAAAATGGAGGAGAAACCATGAGTCAAGGAGAGCAAGCACTTGTGAATCATGTCCAAGGGTCAGAGACTAATGCAGATGCTATGAAAAAAGAGCATTTGTCTATGGACATCATCACTAGTGGTGGTGGTGAGATGTTACCATTGGGAGATGTTAATGTTCCAAGTGGTACACTCAACTCATATGTCCCTTGA 672 0.3884 MTRKKVDLTYITNVSKRKATLSLIKKIDEISILCGIEACAIIYTPNNPQPEVWPSDWGVQSVLSRFRGVSELEQSKKKLCQESFLRQRIIKAEIQLRKLRNEIRKKELTLLMFQYLNSKNNFDNANMIDLNDISNLIDINLEEIERKINISQAQEVKPVVENGGETMSQGEQALVNHVQGSETNADAMKKEHLSMDIITSGGGEMLPLGDVNVPSGTLNSYVP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01760 223 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Pumo5g01760 223 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo5g01760 223 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Pumo5g01760 223 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Pumo5g01760 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 47 IPR002100 GO:0003677|GO:0046983
Pumo5g01760 223 Coils Coil 82 109 - -
Pumo5g01760 223 FunFam Agamous-like MADS-box protein AGL80 9 93 - -
Pumo5g01760 223 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01760 Pumo-Chr5 47985935 47986768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01760 1 150 Type I MADS-box Gene Family AT5G48670 49.032 2.34e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo5g01760 SRF-TF 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01760 - - gmx:102664096 284.648