Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01759 ATGTTGGATTATGAGTGGGGGAACCCTTCCACGATCATACTCGCCGGAAATGAAGGCGCCGGCGCCGGTGAACCCGACCAAACCCGCCGGCAAATCTTCGACCACAACTTCACCATGTTATCCGACAACAACATTCTACATGGTTCCACACCAACCACCACCAACGGTTTCTCTCTTCACCACCACCACTTCAACCCACCACAACAACACCAACACCAACACCACCCCTTCTTCGACCCACGCGCCTTCCAAAGCGTGTCCACCACTTCATTCTCACCACCACCTTCGATGCTCTCGCTTAACCCAATCCCACCTTTAGGCACCTCCCACTGTGGGCTTGGGCCCGGTACCGGGCTTGGATTTCTGCTCACGCCCAAGTCCGAGCACGTGACCTCGCCCATGAATTTCGAGGGCTCTGGTCACAGATTCGGACTTGGGCCTGGGCTTGGGCTCAACCTCGGAGGCCGCACCTACTTTCCCACTTGCAACGACGACACCGTCAATCGACACTACCGAACTAAGGCGGTAGAGTCGGTCCTGACGGTGTCGTCGAATTCACCACGGTGTCAGGCGGAAGGATGCCATGCGGACCTCTCCGACGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTACCACTCCAAGGCCGCCACCGTCGTTACGGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCACCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGGCAGCTCAAGAAATCCACAAATCTCAGCCTTCTTTGGACAATGTTGCAAGGTCCTCGCCTGAATCTGGAGCTCAATCTTCGACGTCGCTGAAGGTGGCAATGTCACCCCCAGATTATTTCCAGCAAAGACCAAACCAAAATAGAGGCTCTTCTTCGTCAACAACATCAGGGTCATTATTTTTCTCAAGTGGTTAG 990 0.5465 MLDYEWGNPSTIILAGNEGAGAGEPDQTRRQIFDHNFTMLSDNNILHGSTPTTTNGFSLHHHHFNPPQQHQHQHHPFFDPRAFQSVSTTSFSPPPSMLSLNPIPPLGTSHCGLGPGTGLGFLLTPKSEHVTSPMNFEGSGHRFGLGPGLGLNLGGRTYFPTCNDDTVNRHYRTKAVESVLTVSSNSPRCQAEGCHADLSDAKHYHRRHKVCEYHSKAATVVTAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQAAQEIHKSQPSLDNVARSSPESGAQSSTSLKVAMSPPDYFQQRPNQNRGSSSSTTSGSLFFSSG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01759 329 Pfam SBP domain 189 262 IPR004333 GO:0003677
Pumo5g01759 329 FunFam Squamosa promoter-binding-like protein 14 180 250 - -
Pumo5g01759 329 ProSiteProfiles Zinc finger SBP-type profile. 186 263 IPR004333 GO:0003677
Pumo5g01759 329 Gene3D - 181 250 IPR036893 GO:0003677|GO:0005634
Pumo5g01759 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 66 319 IPR044817 GO:0003677
Pumo5g01759 329 MobiDBLite consensus disorder prediction 268 329 - -
Pumo5g01759 329 MobiDBLite consensus disorder prediction 255 329 - -
Pumo5g01759 329 SUPERFAMILY SBT domain 187 266 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01759 Pumo-Chr5 47966439 47969188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01759 1 236 SBP-box Gene Family AT1G02065 40.909 2.95e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo5g01759 SBP 8.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01759 - - var:108328505 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01759 5 47966439 47969188 Pumo5g01759 5 47966439 47969188 ECH