Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01758 ATGGAGTTCGGAGGGAACATGTTCTGCCTCGGCAACAGATACCAAAATGGAAACAACACTAACAACAACAACAACAACGGTAGTAACGCTTTCGCTTGGGATTCATGGGAAACACCCACTACAACAACTACTTCTAATGGTAATAATAATAACACCAACACCAGTTCTTCCAGACTGGTCAACGCTTTCAACATGCCGGCGGCGGCGGCGGCGGTGGAGGGATCCGCCGCCGCCGCCGCCGCCGCCACCAGTCACGAGGCGGCGGGGCTGGCCAACGCCCTCATGTTCCTCCCTCAAAACGGTGGCGTTTTGCGCCACCGCCAGCAGCAGCAGCAGCAGCATCCGTATGGCCGAGATGGGTCCCACGTGCACCCGGACCCACACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCTAATGGAAGTGGGAGCGTTGTTGCTGGTTCTGCTGCTGCTACTTTTGGTGGCGGGTTGGTGTTGGGGGATAAGAGAGGGAAAGGCTATTCCGGCGCCGGCGCCGGCGGCGGCGGTGGTGTGGCGGTGAAGGCGGTGGGGTTCACGGCGGCGACGGTGCCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCGCTTCTCAACGCGAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCCAAAGTTGTGGTCTTAGGCTTGGAACAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTCGTGTCAGAGTTTGATGATTCAAAGAGGAGTTGTAGGAGGAGACTAGCAGGTCACAACGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCAAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTCTCCACAAGATGCAGTGCCGCGTTGCGCGAATTGATAGCAGAAAACCGGGCAGCCATCATGGCCAGGCAGTTTGTTTCAGATAGAGATTGGCATATTCATCACCATGCTGTGGAGGACTTCAAGGAGATCCAACCTGAGTCCAATTACTTCCCACAACAAATGTTTCCCCAGACACAGTGA 1092 0.5504 MEFGGNMFCLGNRYQNGNNTNNNNNNGSNAFAWDSWETPTTTTTSNGNNNNTNTSSSRLVNAFNMPAAAAAVEGSAAAAAAATSHEAAGLANALMFLPQNGGVLRHRQQQQQQHPYGRDGSHVHPDPHLMCLKLGKRHYFEDANGSGSVVAGSAAATFGGGLVLGDKRGKGYSGAGAGGGGGVAVKAVGFTAATVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHIHHHAVEDFKEIQPESNYFPQQMFPQTQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01758 363 Gene3D - 190 259 IPR036893 GO:0003677|GO:0005634
Pumo5g01758 363 MobiDBLite consensus disorder prediction 262 283 - -
Pumo5g01758 363 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 162 297 IPR044817 GO:0003677
Pumo5g01758 363 ProSiteProfiles Zinc finger SBP-type profile. 195 272 IPR004333 GO:0003677
Pumo5g01758 363 MobiDBLite consensus disorder prediction 20 55 - -
Pumo5g01758 363 FunFam Squamosa promoter-binding-like protein 14 190 259 - -
Pumo5g01758 363 SUPERFAMILY SBT domain 196 277 IPR036893 GO:0003677|GO:0005634
Pumo5g01758 363 Pfam SBP domain 198 271 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01758 Pumo-Chr5 47893571 47902647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01758 130 271 SBP-box Gene Family AT1G27370 49.296 9.39e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo5g01758 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01758 - - gmx:100806582 498.434