Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01750 ATGGCTCCGAACCTAGAATGTCGTATGTACGAAGCAAAGTACCCGGAGCCGAACATGGCGGTGATGGTACAGGTGAAGAACATCGCGGACATGTGCGCGTACGTGTCGCTGCTGGAGTACAATAACATCGAGGGGATGATCCTGTTCTCGGAGCTCTCTCGCCGCCGGATTCGGAGCGTGAGCAGCCACATCAAGGTGGACCGCATCGAGCCCATGGCGGTCCTCCGCGTCGACGAGGAAAGGGGCAACATCGATCTCAGCAAGCGCAACGTCTCCGCAGAAGCCATCCAGGCCTGCGAGGAAAGGTACAACAAGAGGAAGCTCGTCCAACTCAAAGGGTTAGCGCAGTGGTTTCTTCACATCAAGGAGGCAATGCGTAGGGCTGAGGCTGCTGGAACCGATGACTGCCCCGTCAAAATGAAACTTGTTGCACCCCCGCTTTATGTTCTCACCACCCAGACACTTGATAAGGAGCAAGGAATATTGGCTCTCAACAATGCCATTGCTTCTTGCACTGAAGCAATAGAACAACACAAGGGTAAGCTTGTGGTTAAGGAGGCACCTAGAGCAGTGAGTGAGCGTGATGATAAATTGCTTGCTGAGCACATGGCTAAGCTACGCCAAGATAATGAAGAGCTCAGTGGTGATGAAGACAGCGAGGAAGAAGAAGATACAGGAATGGGCCATTTTGGAGTTTCTTCTTCATGA 708 0.524 MAPNLECRMYEAKYPEPNMAVMVQVKNIADMCAYVSLLEYNNIEGMILFSELSRRRIRSVSSHIKVDRIEPMAVLRVDEERGNIDLSKRNVSAEAIQACEERYNKRKLVQLKGLAQWFLHIKEAMRRAEAAGTDDCPVKMKLVAPPLYVLTTQTLDKEQGILALNNAIASCTEAIEQHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEELSGDEDSEEEEDTGMGHFGVSSS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01750 235 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Pumo5g01750 235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 110 IPR011488 GO:0003723|GO:0003743
Pumo5g01750 235 FunFam Eukaryotic translation initiation factor 2 subunit alpha 4 91 - -
Pumo5g01750 235 Pfam Eukaryotic translation initiation factor 2 alpha subunit 120 157 IPR011488 GO:0003723|GO:0003743
Pumo5g01750 235 Coils Coil 203 223 - -
Pumo5g01750 235 Gene3D EIF_2_alpha 119 224 IPR024055 -
Pumo5g01750 235 Gene3D - 3 91 IPR012340 -
Pumo5g01750 235 MobiDBLite consensus disorder prediction 202 235 - -
Pumo5g01750 235 CDD S1_IF2_alpha 15 89 IPR044126 GO:0003723
Pumo5g01750 235 SMART S1_6 16 89 IPR022967 -
Pumo5g01750 235 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Pumo5g01750 235 SUPERFAMILY eIF-2-alpha, C-terminal domain 120 216 IPR024055 -
Pumo5g01750 235 SUPERFAMILY Nucleic acid-binding proteins 6 89 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01750 Pumo-Chr5 47597305 47598190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01750 2 110 Eukaryotic Initiation Factors Gene Family AT2G40290 83.486 5.08e-50 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01750 K03237 - ming:122086743 257.299