Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01749 ATGAATCTGAGCTACGAACAGAGGCTTCAGGTTGTTGCCAAAATCATTCTCGATGACGACGCACGCTCCGGCAACGCGCCGCCATGCCAGGAAGAGCTTGGGCTCAGGGCGACCCTCAAGCCGCACCAGGTGGAAGGGGTTTCGTGGCTCATACGAAGATACAAACTCGGCGTCAACGTTGTCCTCGTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTCAAATTTACCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATGCAGGCGCAATCTACGCATGAAAATACATGAACATGTAACAGGGCAGTCATCAACACTAAATGTCTTGTTGCCTTTTGATGTGCTGTTAACCTCATATGACATTGCATTGATGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAGAGACTTAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATAATGCCAAGACGTTTGTTGATGACTGGCACGCCTATTCAAAATAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCTTCCGTCTTTGGTACACTGGATCAGTTCCATTCTACGTTTAAGGACATCAGTGATATTTCACCAGTTCATGATGCTCCAAAGGTAAAGGAGAGACTTAAAATTCTGAGAAGTGTATTGGGAGCCTTTATGCTTCGACGTACCAAGTCAAAGCTTATCGAGTGTGGAAATTTAGTACTGCCACCTCTCACTGAGACAACTGTGTTAGTACCCCTTGTCATCCTGCAGAAAAAGGTCTACATGTCAATACTGAGGAAGGAACTTCATAAGCTACTTGCACTATCTTCTGGAACTTCAAATCATCAGTCACTACAGAATATTGTGATACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTGCTTATTCTGGACCAACTTCTTCAGAAGTTACATAATTCTGGACACCGTGTTCTCCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAGCTAATATGGGCTTGAATTCTGAAGCTGACCAAAATGGAGCATTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGTATAAACCTTGTTACAGAGCGGACAGTGGAGGAAGTAATTATGCGGAGGGCAGAGAGAAAATTGCTGCTGAGCCTCAATATTATAGGTGATAACATTCTCAAAGATGACAATAAAGAACCATCTGAAGTTGGAACTGGTGATTTGAAATCTATCATATTTGGGTTACATATGTTTGATCCCACTGAGATCAATGATGGAAATCATAGGGATATGAACATACCAGAAATTAGTGCTATGGCTGACAGGGTGCTTGCTATGCGTGATGAACAAATACTTGATAAGGATGAAAGGAAATTTGAGGTCAATCCAAGAAACATTTTAAAAGGGGATGATGCTAAGGAAAGAGATTCTGCTTCTCTCTCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTTTCCTGGGTTAAAAAATTTGAGGAAGTGTCTAAATCAAGTTGTGACTCAAACTCAATCATGGACTTGAGGAGCAGAAGAAACTTAGATGAGGAAAAGAGTCTAAATCTTGAGTCTGCAAGGAAGATGGCAGAGGAAAAGAAGCTAGCTAGGTGGAAAGCTGTTGGATATGAATCATTGAATGTAAAAGATGCTATCAGTCCAACAGACAATGACATCACATCAGCTTCTGGGTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAATGTTTGTTCGTCTGAACCTGCTATAATTTTCAGCTGCGTTGACACCTCTGGACATTGGGGCCACGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATATGAACAGGCTTCTGAACATGGGGATTTGCATCTTGGTGATTTGCATCTTATAAGCCTTGATGATGGTTGTGATGAACAAAATATGGATGGAAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGCAAAATCCCTCGCAGCGAAATCTCACTTCCCCACTTGGAAAGCTGCTTATCAAAGGCAGCATTCTCAGCCGCTCAGAATTCTGCATCAATACACATGCCACGAATTGGTTATCAAGATGGATCTGATCGTTCAGAGTGGTACACCATAGAACGGCTCCTGAGAAAATATGCTTCCATCTACAACATAAATATATATGTATATTATTATCGAAGATCACGTTAA 2559 0.4166 MNLSYEQRLQVVAKIILDDDARSGNAPPCQEELGLRATLKPHQVEGVSWLIRRYKLGVNVVLVVICPLSVTDGWVSEIVKFTPKLEVFKYVGDKECRRNLRMKIHEHVTGQSSTLNVLLPFDVLLTSYDIALMDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFHSTFKDISDISPVHDAPKVKERLKILRSVLGAFMLRRTKSKLIECGNLVLPPLTETTVLVPLVILQKKVYMSILRKELHKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHNSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSANMGLNSEADQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTERTVEEVIMRRAERKLLLSLNIIGDNILKDDNKEPSEVGTGDLKSIIFGLHMFDPTEINDGNHRDMNIPEISAMADRVLAMRDEQILDKDERKFEVNPRNILKGDDAKERDSASLSCDLGLDEASYLSWVKKFEEVSKSSCDSNSIMDLRSRRNLDEEKSLNLESARKMAEEKKLARWKAVGYESLNVKDAISPTDNDITSASGSVHFVYGDCTAPSNVCSSEPAIIFSCVDTSGHWGHGGMFDALSKLSTSIGDAYEQASEHGDLHLGDLHLISLDDGCDEQNMDGNAPKMVALAVVQSYNPRRKIPRSEISLPHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYNINIYVYYYRRSR 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01749 852 FunFam Putative helicase CHR10 255 572 - -
Pumo5g01749 852 Pfam SNF2-related domain 62 317 IPR000330 GO:0005524|GO:0140658
Pumo5g01749 852 SUPERFAMILY Macro domain-like 680 847 IPR043472 -
Pumo5g01749 852 Pfam Helicase conserved C-terminal domain 338 462 IPR001650 -
Pumo5g01749 852 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 62 851 IPR031053 GO:0003678|GO:0006281|GO:0006338
Pumo5g01749 852 Gene3D Leucine Aminopeptidase, subunit E, domain 1 679 852 IPR043472 -
Pumo5g01749 852 SMART ultradead3 35 207 IPR014001 -
Pumo5g01749 852 CDD Macro_Poa1p-like_SNF2 679 837 - -
Pumo5g01749 852 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 513 IPR001650 -
Pumo5g01749 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 244 IPR027417 -
Pumo5g01749 852 Gene3D - 255 593 IPR027417 -
Pumo5g01749 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 502 IPR027417 -
Pumo5g01749 852 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 199 IPR014001 -
Pumo5g01749 852 Gene3D - 61 254 IPR038718 -
Pumo5g01749 852 CDD SF2_C_SNF 330 473 - -
Pumo5g01749 852 SMART helicmild6 367 462 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01749 Pumo-Chr5 47567767 47579552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01749 336 489 RAD5 or RAD16-like Gene Family AT5G22750 35.065 1.77e-20 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo5g01749 SNF2_N 2.5e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01749 K20092 - gmx:100797182 1461.43