Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01745 ATGGGGAGTATGAGTGACTCAGACAGAAAACGACGTCACTTTAGCTCCTTGTCCCCTACTCCTGCAGCTGCTACTGCCAAGAAGCTACCCTTCTTGCCCGTTTCTGAAGACAAAAAGCTTGATATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACACAAAAATTAGAAACTCAAAAGTTAGAGTATGTAGCTCTTGAGAATAGGTTTTCTCAACTGAAGGAGAGGCAAAAGTCATATGATCCCACTTTAGCAGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTAATGATTTGGAGTTGTGTTCTGAACGTACGAGAGAGTCAAGCAGCAAATCAAATTCTAGATTTGCATCAATCATGGAAGATGGCAGTTCATATACTGTTCAGGATGTGTTTCTCAGCCGACTAATGCAAAGTGATGCAACTGAATGTGCATCCACATATAACTTTGCAAACCAGTTGGAAGAGCATAGAGAAATTACTACTGAAAAAGCTAAAAGCATTTTACAAAATTTACTGACAGCTGTGAATGACCTTTGTGTTCTGATGGATGGATTGCATACTGCATTATTGAAAAAGCTTCCTGGAGATGTTTTGTGTAGGCAGAAATTATCCTCTGATCTTGAGGTGAAAGTTAAAAACTTGAGATTGGAATTCAGTGAACTTCATTTAAAGCACAAGTCTTTAGCAAGCGAGTTCCAAATTCAGAGAGATCTTGATGCCAAAAATAAGGCTGACCTTGAAAGATTAAAAGGGGAACTGACAAGCACTGTTAAAGAGTTAGAAGAAAGCAATCACAAGCTTGCAACTCTTAAGGCAGAGAGAGATGCTGCAAAAGGGGCAGTTCTCCCAGTCTTAAATGTTGGAAGCACACACATTCCTAGTGATAAGATCAGAGACAAGCAAAAGGATTTGCAAGATATGGAATCTACTTTGAAGGAGCTATTGGAACAAGGTTCAGCTCGATTAATGGAACTGAAAAGTCTTCACGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTGAAGTGTATTACTTCTTCCCATGCTTTCCAATTGGTTAGAGATCAGATAGAAAAGTCAAAATCAGAAGTTCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAGAAGGATAATCTAGCTTGGAGAGAGAGGGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGATCTGTGGCAGTTTCAGATTTTAGGGTGGCTGATCTACGCTCTGAGATACAGAAAAAGATAGAGGAAAGAAATGTGGTTGAAAATAAGCTGAAAGAGGAAGCAAGAGAGCCAGGAAGGAAGCAAATTATTGCTGAATTTAAATCTCTGGTTTCTTCATTTCCTGAGGAAATGGGGTCTATGCAAAGCCAACTAAGAAAATATAAAGAATCAGCTTCAGATATCCATTCTCTGCGTGCAGATGTGAAGTCTGTTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGTATTTTCTGTTAGGTCTGCTGGTCAACTTGCTGAGATAAAGAGGCTGCTTGGTGTGGTTCAAGATTTGAGAGAGAGTGAGCGGGACTTGAAGTTGATATTGGAAATGTTTAGACGTGAGTCCATTGATTCAAGGGATATCATGGATGCACGGGAAGCAGAATACAGAGCATGGGCTCGTGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACTTAGAACTTCGAGTTAAGACAGCCATTGAAGCAGAGGCAAGATCTCAACAAAAGCTGGCTGCTGCTGAAGCTGAGATAGCGGACATGAGACAGAAATTAGAAGATTCTAAAAGGCAAATGTGTGATCTGTCTGATGTCTTGAAATCTAAGAACAAACAAAATGAGAACTACTTATCTGAAATAGAGAGTATTGGACAAGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAACATTAAGCTTGTTTTGGAGGGTGTAAGGGCAAGACAGAAGCAGGATTCTTTGCTCATGGAGAAGTGGGTAATTGAACAAGAGATCCAGCAAGCAAACATATCCCTGAACTTATATGATGTGAAAGCTACAAGAATTGAAGACCAGTTGAAGTTTTGTTCAGATCAGCTTCAAAAACTTGCAGAGGATAAGCTTCAAAGTTCTGTCACTTTGGAAAATACACAAAGAAGGCTGTCCGATATTAGAAGACAATCTCAACAGGTTAGGGATACGGTGGTGGAAATGCAATCTAAAATTGGTAGTAATCGAGTGACGCGTATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAATAGAGGAGGATCTGGAGGTTGCTAGGAGAAAGTTTTCATGCCTTAAAGAACAGAATGAGGGCTCTTCAGTAACTGAAAAGCTTCAACAAGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGCCAAGACAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTACTCATGTATCCAGAAAGTTGCTGGGAGTAGGCATCGCAAGTGTCCACAGTGTGCTACAAGCTTTGGGGCTAATGATGTTAAGTCTGTTTATTTGTAA 2643 0.3946 MGSMSDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYVALENRFSQLKERQKSYDPTLAVVKKSWEQLVNDLELCSERTRESSSKSNSRFASIMEDGSSYTVQDVFLSRLMQSDATECASTYNFANQLEEHREITTEKAKSILQNLLTAVNDLCVLMDGLHTALLKKLPGDVLCRQKLSSDLEVKVKNLRLEFSELHLKHKSLASEFQIQRDLDAKNKADLERLKGELTSTVKELEESNHKLATLKAERDAAKGAVLPVLNVGSTHIPSDKIRDKQKDLQDMESTLKELLEQGSARLMELKSLHEERIRILQQLCDLQNTLKNLKCITSSHAFQLVRDQIEKSKSEVLEYQALYEKLQVEKDNLAWREREWYIKNDLADIFQRSVAVSDFRVADLRSEIQKKIEERNVVENKLKEEAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLRKYKESASDIHSLRADVKSVSSILDRKVKECDVFSVRSAGQLAEIKRLLGVVQDLRESERDLKLILEMFRRESIDSRDIMDAREAEYRAWARVQSLKSSLDEHNLELRVKTAIEAEARSQQKLAAAEAEIADMRQKLEDSKRQMCDLSDVLKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKWVIEQEIQQANISLNLYDVKATRIEDQLKFCSDQLQKLAEDKLQSSVTLENTQRRLSDIRRQSQQVRDTVVEMQSKIGSNRVTRMELQVELEKERFAKKRIEEDLEVARRKFSCLKEQNEGSSVTEKLQQELEEYREIIKCSICQDRAKEVVITKCYHLFCYSCIQKVAGSRHRKCPQCATSFGANDVKSVYL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01745 880 Coils Coil 298 318 - -
Pumo5g01745 880 Coils Coil 418 445 - -
Pumo5g01745 880 MobiDBLite consensus disorder prediction 1 15 - -
Pumo5g01745 880 MobiDBLite consensus disorder prediction 1 22 - -
Pumo5g01745 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 868 - -
Pumo5g01745 880 Coils Coil 708 728 - -
Pumo5g01745 880 Coils Coil 771 805 - -
Pumo5g01745 880 CDD RING-HC_Bre1-like 820 878 - -
Pumo5g01745 880 SUPERFAMILY RING/U-box 820 878 - -
Pumo5g01745 880 Coils Coil 366 386 - -
Pumo5g01745 880 Coils Coil 736 756 - -
Pumo5g01745 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Pumo5g01745 880 SMART ring_2 828 866 IPR001841 -
Pumo5g01745 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Pumo5g01745 880 Coils Coil 244 281 - -
Pumo5g01745 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Pumo5g01745 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Pumo5g01745 880 Coils Coil 49 76 - -
Pumo5g01745 880 Coils Coil 582 616 - -
Pumo5g01745 880 FunFam E3 ubiquitin protein ligase 809 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01745 Pumo-Chr5 47411239 47436624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01745 825 879 C3H Transcription Factor Family AT2G42030 35.714 6.95e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01745 K10696 - gmx:100790337 1566.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01745 5 47411239 47436624 Pumo5g01745 5 47411239 47436624 ECH