Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01744 ATGTGCCCCTCACTCATTCTCTGTGCCTCTCTAAATCAAACCTCACCCACCCTCTCTACCTTGGGGAAACATATCAACATGGAAAGTGATGCTGGGGAAAACTTGTTTGGCACATTCTCCACATCCATCATCATCTCCACCACCACCACCACCACCACCTCATCATCATTATCATCTCCAACATCTTCTACCTCAAGCTCAAACTCTTGCACCAAGCAAGACTCCCAAACAAGTACTCCTCCAGATGATTCAAATTCAACAGCAGCTCAAAACCAAAACACCCCAAATAGCAAGAAAAGACAAAGAAGTGACAATGAGAACAAACACAAACACCCCAGTTACAGAGGAGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATCCGTGAGCCCAGAAAGAAATCAAGGATATGGCTTGGAACATACCCCACTGCAGAAATGGCAGCAAGAGCACATGATGTGGCAGCTTTAGCCATCAAGGGCCATTCTGCTTTCCTCAATTTCCCCAATTTGGCTCAAGATCTTCCAAGGCCCATCAGCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAGCAACCACTTTCTTTGATGATGATAAACATTGTCAAGCAGAAAAAGCTGAACAAAACCATGCAGAACAACAAGCTTCTTCTTCTTCAACTCTATGCTTGGACAATACTGAAGCAGAGCAAATTCAACCAGAACAAGCTTCATCTTCAACTCCATCCATGGACACCACTCAAGATTCTTCAAGTTCTCCCTCTACTGCAGATGAAGACACACTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACATTGGACTTTTCTCCTACTCTTCTTCTTGGCATTTATGTGCAGTTGATAGTGGATTCAGGCTTGAAGAGCAATTTTTGTGGGAGAATTTATAG 924 0.4437 MCPSLILCASLNQTSPTLSTLGKHINMESDAGENLFGTFSTSIIISTTTTTTTSSSLSSPTSSTSSSNSCTKQDSQTSTPPDDSNSTAAQNQNTPNSKKRQRSDNENKHKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAFLNFPNLAQDLPRPISTSPKDIQAAAAKAAATTFFDDDKHCQAEKAEQNHAEQQASSSSTLCLDNTEAEQIQPEQASSSTPSMDTTQDSSSSPSTADEDTLFDLPDLFPDGNIGLFSYSSSWHLCAVDSGFRLEEQFLWENL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01744 307 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Pumo5g01744 307 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Pumo5g01744 307 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Pumo5g01744 307 CDD AP2 112 172 IPR001471 GO:0003700|GO:0006355
Pumo5g01744 307 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Pumo5g01744 307 Pfam AP2 domain 112 163 IPR001471 GO:0003700|GO:0006355
Pumo5g01744 307 MobiDBLite consensus disorder prediction 232 263 - -
Pumo5g01744 307 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 91 272 - -
Pumo5g01744 307 MobiDBLite consensus disorder prediction 49 116 - -
Pumo5g01744 307 MobiDBLite consensus disorder prediction 232 268 - -
Pumo5g01744 307 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
Pumo5g01744 307 Gene3D AP2/ERF domain 113 171 IPR036955 GO:0003700|GO:0006355
Pumo5g01744 307 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Pumo5g01744 307 MobiDBLite consensus disorder prediction 49 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01744 Pumo-Chr5 47383538 47384929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01744 101 303 AP2-EREBP Transcription Factor Family AT2G44940 52.582 3.74e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g01744 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01744 - - pvu:PHAVU_008G141000g 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01744 5 47383538 47384929 Pumo5g01744 5 47383538 47384929 ECH