Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01742 ATGGGTCGTCGTAAGATTGAAATTGCGAAGGTGAAAGACCCTAATACGAGGCAAGTCACATTTTCGAAACGTCGAACAGGCTTATTCAAAAAGGCGAATGAATTATCCATCTTGTGCGGAGTAGAAATTGCTATTGTTGTGTTCTCTATTGGAGACAAACCTTACTCTTTTGGACACCCAAATGTTGATGCTGTTGCGGCCAAGTTTCTTCAACAAGCAACCAATTCAAATGATGCCAAACAAAATGATGTCCAAGGAAACAACCCATCTAATAAAGTTGGTGACATGGATAGGCTAAATCAACAATTGTCTGAAATTCAATGCCAAATACTCGAGGAAGAAAAGAAGGGTGCAAAGCATGATGAAAGACTAAAACAACGTGAAGTGACACAACTCTCTCAATATAAAGAATTGCAAGATTCATGTTTAGAGCTCCAACAAAGGGTGAAGGACTATATTGATGCGATCGAGGTGTCGGAGTATATGTTGCTTCTTGCACAAGAACCAATAGTTGGAATAACACAACAAGTGACTACAAAGAAAAGAAGAAAGAATTGA 558 0.3871 MGRRKIEIAKVKDPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSIGDKPYSFGHPNVDAVAAKFLQQATNSNDAKQNDVQGNNPSNKVGDMDRLNQQLSEIQCQILEEEKKGAKHDERLKQREVTQLSQYKELQDSCLELQQRVKDYIDAIEVSEYMLLLAQEPIVGITQQVTTKKRRKN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01742 185 Coils Coil 135 155 - -
Pumo5g01742 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo5g01742 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo5g01742 185 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Pumo5g01742 185 CDD MADS 2 60 - -
Pumo5g01742 185 PANTHER MADS BOX PROTEIN 3 148 - -
Pumo5g01742 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo5g01742 185 Coils Coil 96 116 - -
Pumo5g01742 185 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Pumo5g01742 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo5g01742 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo5g01742 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo5g01742 185 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Pumo5g01742 185 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01742 Pumo-Chr5 47291527 47292084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01742 1 167 Type I MADS-box Gene Family AT2G34440 38.068 3.86e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo5g01742 SRF-TF 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01742 - - gmx:100791127 306.99