Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01719 ATGACTTCAAAACTCAACCATGGATATGGCACCAATGGGGATGGGGCATCAAAGCCAATTCACTTTTTGAAGATCATGCTCCCTGACGATCTTCTGCAAGGAAAGCTAATGCTTCCAGCAAAGTTTGTGAGGAAATATGGAAAACACCTATCCAACACAATGTTTCTTAAGCTTCCAAACGGTGCAAAATGGAGGGTAAATTTGGAGAAACGTGATGGTAGTGTTTGGTTTCAAGGAGGTTGGAAAGATTTTGTGGAGTATCACTCTCTAGCAGATGGACACCTATTGGTTTTCAGATATGATGGAACATTCCATTTTCATGTGCTCATCTTTGATACAAGGGCCATTGAAATAGACTACCCTGTCAACAAAGCAAATCACAAAAGGGCCAGAATTAGCAGTGAAGAAATTCAACCTTGTAATATGAAAAATCCAAATGAAGGGAAGAGAAACATGGAAGCTGCTGGGAATATTTCCTTCACAGTGATGATGAAATCAAGCTTTAGGCAGCACATGTATCTGCCAAAGGACTCACTGAAAGGCTACATCAAACATGGTGAACAATATGTTAGGCTTCTGGTTGGGGACAGATCATGGAGGGTTAGACTGATACATTATAAAAATAAATCTGCATGTTACTTTACTGCACAGTGGCCAGCTTTTGCAAGGGAAAATGATTTACAAGAAGGAGATGCTTGTTTGTTCCAACTCCTGAACAGTAGCGATGATATGGTGATGAAAGTTACCATTTCTAGAGAGGGACAATCCTCTCTTGAGCCATAA 783 0.4036 MTSKLNHGYGTNGDGASKPIHFLKIMLPDDLLQGKLMLPAKFVRKYGKHLSNTMFLKLPNGAKWRVNLEKRDGSVWFQGGWKDFVEYHSLADGHLLVFRYDGTFHFHVLIFDTRAIEIDYPVNKANHKRARISSEEIQPCNMKNPNEGKRNMEAAGNISFTVMMKSSFRQHMYLPKDSLKGYIKHGEQYVRLLVGDRSWRVRLIHYKNKSACYFTAQWPAFARENDLQEGDACLFQLLNSSDDMVMKVTISREGQSSLEP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01719 260 Gene3D - 15 115 IPR015300 -
Pumo5g01719 260 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Pumo5g01719 260 SUPERFAMILY DNA-binding pseudobarrel domain 157 250 IPR015300 -
Pumo5g01719 260 CDD B3_DNA 160 252 IPR003340 GO:0003677
Pumo5g01719 260 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Pumo5g01719 260 Pfam B3 DNA binding domain 161 251 IPR003340 GO:0003677
Pumo5g01719 260 SUPERFAMILY DNA-binding pseudobarrel domain 17 112 IPR015300 -
Pumo5g01719 260 CDD B3_DNA 21 112 IPR003340 GO:0003677
Pumo5g01719 260 Gene3D - 141 254 IPR015300 -
Pumo5g01719 260 ProSiteProfiles B3 DNA-binding domain profile. 157 254 IPR003340 GO:0003677
Pumo5g01719 260 SMART B3_2 22 114 IPR003340 GO:0003677
Pumo5g01719 260 SMART B3_2 160 254 IPR003340 GO:0003677
Pumo5g01719 260 PANTHER B3 DOMAIN-CONTAINING 17 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01719 Pumo-Chr5 46589153 46590519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01719 22 138 B3 DNA Binding Superfamily AT1G49475 37.607 2.61e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo5g01719 B3 8.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01719 - - gmx:100793986 420.239