Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01718 ATGTATGGGGGGGTTCCCGTTGCTTGGAGGACGCGTAGCAAGCGGGGAAGGGTTGTTGGGAGTGGTTTAATAATGGGTCAGAAGAAGAAAAGGGTGAATGACCATGAAGTGATTGTCTTGGAAGATGGTGAAGTTGCAAGTTTGAAAATTGAACCTGGGTCTGCTGCTTCATCTTCATCATCATCTGGTGCTCGTGCTTTGAAGGGTGAAAGGGTATCTGCACGTGGTTTCGAGCGTTTGGGAGGGCATGCAGGTGACCCTATTGAAATCGGTGACAGTGATGATGAAGAGGGGTTGAGGGATTCTGAGAAGAAGAGGTTTCTGATTGAAGAGGAAAGGAAGAGTGAGGAGGGTAAAGGGTGTTTTGTGTTTGTTGATAAAGTTGAGAACTTTGGCGATGATGACTATGGCTGTGTACCTGAAAAGCCGATTGTATTGACGGTTGATTCAGATGGGGATAGAGGGATTGAGAAGGAACATGGCGTGGCTGAGAGTGGCTCAAATGATGATGGATATGATTCTATCTTGTCTTTAACGGAGAGTGATGATGGTGTGACTAGTGATGAAGATTTTGAGGTTGATGATGATGGGGCTGAGAGTGATTACTACTCGAGGAGTGAGGACAGTGATTCTTCTTCTTATGATGATGAGAGGGGGGGATACAGCAGGATGGTGAAGGAGAGGGTGAGAAAGGTGGAGAGTGAAACTGAAAGCAGTGGAGTTTGCAAAAGAAAAGGTGGAAGGAAAGATAATGAGCAGGTAGAGGAGGAAGAGCAATGGATTGGTGCTGATTGTGCTAGTGTGACCTCTAGTAAATCTGAGACTTATAAGGAGGAAGCAAGGAATGCGGCACAGAAACATGTAGCAAAGAGGGTGGAAAGTGTCAATGCTGATGCAGAAGTATTTGGTGAACACTGGGAAAGTCCAGGTTGCCCTCTGCATTCTGAAGCTGAAGCACTAGAGCATAGGAAGAAAAGAGATAGAGCGCCACTGCAGAAAAAGACAGAAGATTCAACTGTGGTCAAGAAGAGTGAGAAATATAATAATGTCGTTGCCAATGACTGTGTGATTCTTGATGACCATGAAGGAGAAGAGCATACAGGCAGGAAGAGTGTTTCCCTTTTGCCAAAAAGCCAAGAGAAGACAGGAGATTCGGCTAAAGTTGTAATAAAAAAAGACAGGAAGGGCAGAGAGCATAAATATGGGTTTAATAGCAATAAATGCGAGAAGGTGAGGGTGGTGGGTGATGAAACTGGTGAAAAAGATGAGCTGTATGAAGTCCTAAGGATGCCATCTAGAATAAAAAATCGATGTTTTAAATTTTTTACCGAATGCTTTTGGGGCAAGAATGATTCTGTTAAAGATGATGATTCTGTTAAAGATGATTCAAATCAGTTGGAAGTAAAGGATGATGATGTTGATCAGGGTCAGACTCAGCTATTAGCTTCTAGGGAGACAGTCCCTTTGAATTGGAACTCTATGAAGAAAGAACCTTTTGAAAAATCAGAGTTTGAGAAGGAGTTAGATAACTTGTGGGGTGAAATGGATATGCTGCTTCGAGTTGAAGAAATTGGGTCTCAGATTGATAATATAGGGACAAATGAAGCAAGAGAAAATGAAGAAAATCCATTGTCGCAGTGCAAGCATGACACTATTTTTAATGAGGAGATTGGGATATACTGCAGATGGTGTGGTTGGATTGCCACTGAAATCAAATATATCACGCCACCATTTGTAAGCACGGTGGATTATGAAAGATCCGGTAGAGAGGTGTTATCTGGTGGAGGGAAAACCTCACAATTTGATGGGGCTCTGTTTAATGATTCTGGTGATGATGACTCAGAGGCAGTTTGGTCTCACAATGAAGGCACAGTTTGGGATCTTATTCCTTATATAAAACAAAGCTTGTATCCTCACCAACAAGAAGGGTTTGAGTTCATTTGGACAAATTTGGCAGGAACCACTGACCTTGCCAAGTTGAAGAGGGTTGACCCGCATAGTGAAGGTGGGTGTATTATATCTCATGCTCCCGGAACTGGAAAGACGAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAATTGTTTCCAAAGTGTCTACCTATTATCATTGCTCCTGCCAACATATTGCTTACTTGGGAAGATGAGTTAAGCAAGTGGAACATAGGAATTCCATTCCATAACTTGAACAATGCTGAATTATCTGGAAGAGAGCAAGACATTAATGAAGTTGACTGGTCTGGCAATCAAAGGCAGAATAAGGATGCCATCCGAATGGTGAAGCTGTGTTCATGGTACAAAGAGAAGAGCATTCTATTAATCAGCTACCATTTGTATGAGAGGCTAGCCAGGGGGATGTCTGAAGGTGATGGGGAAAAAGAGAAGAAAAATAGAAAGATGAAAAAAGAGAAGAAACGTGCAAGGACTCGCAAGTACATTGAGACTGCAATAGGAAAGGTTTTGCGTGACTATCCTGGTTTGCTAATTCTTGATGAAGGGCACACACCACGGAATCAGCGTAGCTATATTTGGAAGGTTCTTTCTGAAAGTAAATCTCAGAAGCGAATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTGGAACTCTACAATATTTTGTCCTTGATGAAACCATCCTTTCCTGACAGCATACCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAATGCAGGAAAGGAAAGCTTCAAAAGATGCGAGCTGGGAACCTGTTTCTTCAGCTGATGAGAAAATAAACCAGCTAAAATTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGGTTGAGAGATTGTGTGCTGGTTTTGAAGCCAGACAGTTTGCAGCAAGAAACTCTGGACAGCATTGATTGTTCTCAAAACGTACTGAACTTTGAACACAAGTTGGCCTTGGTGTCAGTCCATCCATCTCTTTTCCTAAACTGCCCTCTGTCAAAAAAAGAAGAATCTGTTGTTGACAAGGATCGGTTGGAAAAGCTTAGATTGGACCCTTATGGAGGGGTCAAAACCAAATTTTTGTTGGAGCTTGTGAGACTCTGTGATGCAGTTAATGAGAAAGTCCTTGTTTTCAGCCAATTTATTGATACCTTGTGCCTAATCAAGGACCAACTCGAGTCTGTCTTTAAGTGGTCTGTGGGGACTGAAGTGTTGTATATGTATGGCAGGCTAGACCAAAAGCAAAAACAGTCCCTCATTCATAGTTTCAATGATACAAATAGCCAAGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAATTGGGGCTTCAAGGGTGGTGCTTCTCGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTCCCGAGCATATAGACTTGGACAAAAGAGGGTTGTTTTCACTTATCATCTTCTTGCACAGGGTACCCCCGAATGCACCAAATATTCTAAACAAGCAGAAAAGGACCGGTTATCTGAACTGGTTTTCTCTAATAAAAATGCTAAAAGTGATAAGCTCAACAGTTGTGGAGTAGTGCTTGAGGATGCAGTTCTTGATCTCATGGTTCAGCATGAAAAACTTGAGGATATGTTTGGTGAACTTCTGGTTCAACCGAAGGAGAGAGATTTGGAAACTTTGGGCCCTTGA 3672 0.4224 MYGGVPVAWRTRSKRGRVVGSGLIMGQKKKRVNDHEVIVLEDGEVASLKIEPGSAASSSSSSGARALKGERVSARGFERLGGHAGDPIEIGDSDDEEGLRDSEKKRFLIEEERKSEEGKGCFVFVDKVENFGDDDYGCVPEKPIVLTVDSDGDRGIEKEHGVAESGSNDDGYDSILSLTESDDGVTSDEDFEVDDDGAESDYYSRSEDSDSSSYDDERGGYSRMVKERVRKVESETESSGVCKRKGGRKDNEQVEEEEQWIGADCASVTSSKSETYKEEARNAAQKHVAKRVESVNADAEVFGEHWESPGCPLHSEAEALEHRKKRDRAPLQKKTEDSTVVKKSEKYNNVVANDCVILDDHEGEEHTGRKSVSLLPKSQEKTGDSAKVVIKKDRKGREHKYGFNSNKCEKVRVVGDETGEKDELYEVLRMPSRIKNRCFKFFTECFWGKNDSVKDDDSVKDDSNQLEVKDDDVDQGQTQLLASRETVPLNWNSMKKEPFEKSEFEKELDNLWGEMDMLLRVEEIGSQIDNIGTNEARENEENPLSQCKHDTIFNEEIGIYCRWCGWIATEIKYITPPFVSTVDYERSGREVLSGGGKTSQFDGALFNDSGDDDSEAVWSHNEGTVWDLIPYIKQSLYPHQQEGFEFIWTNLAGTTDLAKLKRVDPHSEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPIIIAPANILLTWEDELSKWNIGIPFHNLNNAELSGREQDINEVDWSGNQRQNKDAIRMVKLCSWYKEKSILLISYHLYERLARGMSEGDGEKEKKNRKMKKEKKRARTRKYIETAIGKVLRDYPGLLILDEGHTPRNQRSYIWKVLSESKSQKRILLSGTPFQNNFLELYNILSLMKPSFPDSIPQELKKFCQSRLMQERKASKDASWEPVSSADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDSLQQETLDSIDCSQNVLNFEHKLALVSVHPSLFLNCPLSKKEESVVDKDRLEKLRLDPYGGVKTKFLLELVRLCDAVNEKVLVFSQFIDTLCLIKDQLESVFKWSVGTEVLYMYGRLDQKQKQSLIHSFNDTNSQAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAISRAYRLGQKRVVFTYHLLAQGTPECTKYSKQAEKDRLSELVFSNKNAKSDKLNSCGVVLEDAVLDLMVQHEKLEDMFGELLVQPKERDLETLGP 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01718 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 662 880 IPR014001 -
Pumo5g01718 1223 MobiDBLite consensus disorder prediction 147 260 - -
Pumo5g01718 1223 MobiDBLite consensus disorder prediction 77 103 - -
Pumo5g01718 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1024 1182 IPR001650 -
Pumo5g01718 1223 MobiDBLite consensus disorder prediction 198 256 - -
Pumo5g01718 1223 Gene3D - 612 931 IPR038718 -
Pumo5g01718 1223 Pfam Helicase conserved C-terminal domain 1021 1136 IPR001650 -
Pumo5g01718 1223 SMART helicmild6 1051 1136 IPR001650 -
Pumo5g01718 1223 MobiDBLite consensus disorder prediction 50 69 - -
Pumo5g01718 1223 Gene3D - 938 1211 IPR027417 -
Pumo5g01718 1223 Pfam SNF2-related domain 646 961 IPR000330 GO:0005524|GO:0140658
Pumo5g01718 1223 SMART ultradead3 632 888 IPR014001 -
Pumo5g01718 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 930 IPR027417 -
Pumo5g01718 1223 MobiDBLite consensus disorder prediction 147 166 - -
Pumo5g01718 1223 CDD SF2_C_SNF 993 1147 - -
Pumo5g01718 1223 MobiDBLite consensus disorder prediction 320 340 - -
Pumo5g01718 1223 MobiDBLite consensus disorder prediction 183 197 - -
Pumo5g01718 1223 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 186 1217 IPR044567 GO:0080188
Pumo5g01718 1223 MobiDBLite consensus disorder prediction 52 66 - -
Pumo5g01718 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 1180 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01718 Pumo-Chr5 46213836 46218118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01718 1034 1181 RAD5 or RAD16-like Gene Family AT5G43530 38.514 8.86e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo5g01718 SNF2_N 3.3e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01718 K10875 - gmx:100806733 1718.75