Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01717 ATGTATAAGGGGGTTTCTGTTGCTGGCAGGACGCGAAGCAAGGGATTTGCGGTTGAGAGTGGTTTGCCAGTGGGTCGGAAGAGGAGGAGAAGGGTGGATGTTGTTGTTGATGATGATGATGATGATGATGATGATGATGATGTTATTTGTTTGGGAGAGAAATTACCGGGTGAAGGAGAAAGTGCAAGTGCGAAACCAGATGATGCTATGAATATGGGTTTTGAGTTTTTGGGAGAGAGTGAGGATGGTCCTGTGGAGGTGGTTGAAATCAATGACGGTGATGATGAGGCTGAAGAGGAGCTTGGGGAATGTGAGAAGAAGAGGGTTGAGGTTAAGGAGGAAGTGAAGGTTGAGGATGCTGAAAAAGTTGAGAGCTTTGGTGATGATGAGTGCGGTTCTACACGTGATAACCCGGTTGTTTTGATGCGTGGTTCAGATGGGGATGATCAGAGTGAGGAGGAACATGGCAGGTATGGAAGAAGTAGCTCTGATGATGGATATGGTTTGCTTTCGTCTTCAACGGAGAGCGAGGATGATGAGACGAGTGATGATGATTTCAAGGTTGATGTTGATGATGATGATGATGATAGGCTTGAGAGTGAAGAATATTCAAGCAGTGAGGAGGAGAGTGATGATTCTTCTTGTGATGATAAGAGGGGGGGATACAGGAAGTTTGTGAAGGAGAGGGTGAGAAATCTGGTGTGTGAATCTGAGAGCAGTGGAGTTTGCAGAAAGAAAAGTAAAAGGAAAGAGAGTATGCAGGTAGAGGAGGAGGAGAAATGGAATGGTGCTGACTGTGCTAGTGTGTCATCTAGTAAATCAGATATTTGTAAGGATGGAACAAAGAAGACAGAAGAGAAACATGCATCAAAGAGAGTAGAAAGTGTCAATGTTGGTGAGTCATCTAGTAAATCAGACTTTTGTAGGGAGGAAAAAAAGAAGGCTGAAGAGAAACATGCAGCAAAGAGAGTAGAGAGTGTCAATGCTGCTGATGCTGAACTATCTGTTGATCAGGCGCCGAGTCGGTCATTAGATGCTAGGGAGACAGTCCCTTTGAATAGGAACTGTGAGAAGAAAAAAGCTGTTGAACCAGAGTCTGAGAATGAGATCAATATGTTGTGGAATGAATTGGATATTGCTCTTCAAGAAACTGAGACAGGAGATTCAACTATGGTGAAGAAGCATGTGAATCTCAAAGAACATGAAGAAAAAAAGCATCATCATGACAAAGGATCGGGTGTTAGAAGGAAAGAGAGGATGGGAGATTCAGCTAAATTTGTTATCAAGGAGGATGGTGAAACCGGTAATGGAGATGGGCTCCATGAAGTCCTGAAGATGTCATATAGATCAAAGAACAGGGGTTTTAAATTCTTTACCGAATGCTTTTGGGGCAAGCCTGATTCTGATAGAGATGATCCAAATGAGTTGAAAGAAAAGAATGGTGATTTTGTTCAGGGTCATACTCAGCCATTAGCTTGTGGGGAGGGAATCCCTTTGACATGGGACTTTATGAAGAAAAAACCTGTTGAAAAATCAGAGGCTGAGAAAGAGTTAGATATGTTGTGGGCTGAAATGGATATGTTGCTTCGAGCTGAAGAAATTGGGTCCCTGTTTGATAATACAGGGACAACTGAAGCAAGAGAAAATGAAGAAAATCCAGCCTTGCATTGCAAGCATGACACTATTTTTAATGAGGAGATTGGGATATGTTGCAGATGGTGTGGTTGGGTTGAGACTGAAATCAAATATATCACGCCACCATTTGTAAGCACAGTGGATTCTGAAAGATCAGGTAGAAGGGGGTTATCAAGTGGAGGAAACATGGCACAATTTGATGGGGCTATGTTCAATGAATCTGGTGATGACTCAGAGGCAGTTTGGTCTCGCAATGATGGCACAGTTTGGGACCTTATTCCTGGCATAAAACAAAAAATGTATCCTCATCAACAAGAAGGAATTGAGTTTATTTGGGCAAATTTGGCAGGAACCACTGACCTTGCCAAGTTAAAGAGGCTTGATCCGCGCAGTGAGGGTGGGTGCATTATTTCACATGCTCCTGGAACAGGAAAGACGAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAACTGTTTCCAAAGTGTCTACCTGTCATCATTGCTCCTGCCAACATATTGCTTACTTGGGAAGATGAGTTGAGGAAGTGGAACATAGGAATTCCATTCCATAACCTGAACAATGCTGAATTGTCAGGAAACGAAAATGCAATCAATGAATTTGGCCATCAAAAACTGAATAAGGATGCCATAAGAATGGTGAAGTTGTGTTCATGGTACAGAGAGAAGAGCATTTTGTTAATCAGCTACAATTTATATGAGAAGCTAGCTGGGGGGAAGTCTGAAGATGATGGGGAGAAAGAGAAGAAAAATAGAAAGATTCAAAAAGAGAAGAAACGTGCAAGGACTAGGGAGTGTATTGAAACTGCAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTATTAGTTCTTGATGAAGGGCACACACCACGGAATCAGCGCAGCTGTATCTGGAAGGTTCTTTCAGAAAGTAGAAGTCAGAAGCGAATCCTTCTTTCGGGGACTCCTTTCCAGAACAATTTTCTGGAACTCTTCAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAGCATACCACAAGAACTGAAGAAGTTCTGCCAAAGTAAACTAATACAGGAAAGGAAAGCTTCAAAAGATGTGAGTTGGGAACCCATTTCTTCGGGAAATCCAGCTGATGAGAAGATAAAACAGCTGAAATTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGGTTGAGAGATCACGTGCTGGTTTTGAAGCCAGAAATCTTGCAGCAAAAAATTCTGGAGAGCATTGAATGTTCTCAGAATGCACTCAATTTTGAACACAAGTTGGCCTTAGTCTCTGTACATCCATCCCTTTTCCTCAGCTGCTCTCTGTCAAAAAAGGAAGAATCTGTTATCGACATGGATCTGTTAAAGAAGTGTCGATTGGACCCTTATGAAGGGGTCAAAACCAAATTTTTGATGGAGTTTTTGAATTTATGCGATGCTTTTAATGAGAAGGTCCTTGTTTTTAGCCAATTCATTGATACCTTATGCTTAATTAGGGACCAACTCCAGAAAGCCTTCAATTGGTCTGAGGGCACAGAAGTGTTGTTTATGCATGGCAGGCTTGAGCAAAAGCAAAAACAGTCCCTCATTCATGGTTTCAATGATGCAAATAGCCGAGCAAAGGTTTTGCTTGCTTCTATAAAAGCATCTTCTGAAGGGATTAACTTAATTGGAGCTTCAAGGGTGGTGCTTCTTGATGTTGTTTGGAATCCCTCAGTGCAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAGAAGAGGGTTGTTTTCACTTATCATCTTCTTGCACAGGGCACCCCTGAATGCACAAAATATTGTAAACAAATAGAAAAGAACCGGTTATCTGAACTGGTTTTCTCAAATAGAAATGCAGAAAGTGATAAGCTCAAGAGTAGTGGAGTAATGCCTGAGGATAGAGTTCTTGATGCCATGGTTGGAAAACTCAAGGACATGTTTGGTGAATGTCTGGTTCAACCAAAGGAGGGAGATCCGATTGAGTCATAG 3687 0.4201 MYKGVSVAGRTRSKGFAVESGLPVGRKRRRRVDVVVDDDDDDDDDDDVICLGEKLPGEGESASAKPDDAMNMGFEFLGESEDGPVEVVEINDGDDEAEEELGECEKKRVEVKEEVKVEDAEKVESFGDDECGSTRDNPVVLMRGSDGDDQSEEEHGRYGRSSSDDGYGLLSSSTESEDDETSDDDFKVDVDDDDDDRLESEEYSSSEEESDDSSCDDKRGGYRKFVKERVRNLVCESESSGVCRKKSKRKESMQVEEEEKWNGADCASVSSSKSDICKDGTKKTEEKHASKRVESVNVGESSSKSDFCREEKKKAEEKHAAKRVESVNAADAELSVDQAPSRSLDARETVPLNRNCEKKKAVEPESENEINMLWNELDIALQETETGDSTMVKKHVNLKEHEEKKHHHDKGSGVRRKERMGDSAKFVIKEDGETGNGDGLHEVLKMSYRSKNRGFKFFTECFWGKPDSDRDDPNELKEKNGDFVQGHTQPLACGEGIPLTWDFMKKKPVEKSEAEKELDMLWAEMDMLLRAEEIGSLFDNTGTTEARENEENPALHCKHDTIFNEEIGICCRWCGWVETEIKYITPPFVSTVDSERSGRRGLSSGGNMAQFDGAMFNESGDDSEAVWSRNDGTVWDLIPGIKQKMYPHQQEGIEFIWANLAGTTDLAKLKRLDPRSEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPVIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGNENAINEFGHQKLNKDAIRMVKLCSWYREKSILLISYNLYEKLAGGKSEDDGEKEKKNRKIQKEKKRARTRECIETAMGKVLRDYPGLLVLDEGHTPRNQRSCIWKVLSESRSQKRILLSGTPFQNNFLELFNILCLMKPSFPDSIPQELKKFCQSKLIQERKASKDVSWEPISSGNPADEKIKQLKLLMNPFVHVHKGSILQKNLPGLRDHVLVLKPEILQQKILESIECSQNALNFEHKLALVSVHPSLFLSCSLSKKEESVIDMDLLKKCRLDPYEGVKTKFLMEFLNLCDAFNEKVLVFSQFIDTLCLIRDQLQKAFNWSEGTEVLFMHGRLEQKQKQSLIHGFNDANSRAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVQRQAICRAYRLGQKRVVFTYHLLAQGTPECTKYCKQIEKNRLSELVFSNRNAESDKLKSSGVMPEDRVLDAMVGKLKDMFGECLVQPKEGDPIES 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01717 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 906 IPR027417 -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 176 211 - -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 791 811 - -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 276 294 - -
Pumo5g01717 1228 Pfam SNF2-related domain 654 973 IPR000330 GO:0005524|GO:0140658
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 400 419 - -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 85 100 - -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 241 263 - -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 146 161 - -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 101 131 - -
Pumo5g01717 1228 Gene3D - 623 935 IPR038718 -
Pumo5g01717 1228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 671 886 IPR014001 -
Pumo5g01717 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 831 1191 IPR027417 -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 29 220 - -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 304 326 - -
Pumo5g01717 1228 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1030 1191 IPR001650 -
Pumo5g01717 1228 CDD SF2_C_SNF 1002 1156 - -
Pumo5g01717 1228 SMART helicmild6 1060 1145 IPR001650 -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 468 482 - -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 468 487 - -
Pumo5g01717 1228 Gene3D - 952 1217 IPR027417 -
Pumo5g01717 1228 MobiDBLite consensus disorder prediction 236 348 - -
Pumo5g01717 1228 Coils Coil 94 114 - -
Pumo5g01717 1228 SMART ultradead3 641 894 IPR014001 -
Pumo5g01717 1228 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 387 1224 IPR044567 GO:0080188
Pumo5g01717 1228 Pfam Helicase conserved C-terminal domain 1033 1145 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01717 Pumo-Chr5 46162988 46167047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01717 1043 1191 RAD5 or RAD16-like Gene Family AT5G43530 35.570 4.15e-18 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo5g01717 SNF2_N 1.2e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01717 K10875 - gmx:100807262 1589.32