Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01661 ATGGGTAGGGATCAGAAAAGTGTGGTGGCTATGGTTAGCCAGGAGAGAAAAAAGAAGAAAAATGGGTCTATTGGGTTTGGGTCCATTTTCATGCATGCCGATGGCAAAGATTTGTTTCTTATGATTTTAGGTACCATTGGAGCAGTTGGGGAAGGCTTGGCCACCCCTTTAGTGTTGTATATCAGTAGCCGCATGATGAATAACATTGGGAGTTCCTCTACCATGGATGGAAACACTTTCATCCAAAACATCAATAAGAATGCGGTGGCTTGGTTATATTTGGCTGGTGCCTCTTTTGCGGTTTGCTTCATCGAGGGTTATTGTTGGACAAGAACAAGCGAAAGACAAGCAGCGAGAATGAGATGCAGGTATCTGAAAGCAGTGCTCAGACAAGATGTCGCGTACTTTGATTTGCATATCACAAGTATTACAGAGATCATCACTAGCGTCTCCAGCGACAGCCTCGTAATTCAAGATGTTCTCAGCGAAAAAGTTCCGAATTTCTTGATGAACATTTCATTGTTCGTTGGGAGCTACATAGCGGCTTTTGCAATGTTGTGGAGGCTGGCCATTGTGGGGTTTCCTTTCGTGGTTCTTCTGGTGATCCCGGGTTTTATTTACGGCAAGACTTTGATGGGGTTGTCTAGTAAAATCAGAGAAGAGTATAATCAAGCTGGGACAGTGGTAGAACAAACAATTTCTTCCATCAGAACCGTTTATTCGTTTGTGGGGGAAAGCAAGACCATGAACGCTTTCTCAAACGCGCTTCAAGGGACGGTTAAGTTGGGCCTGAAACAAGGCTGGGCTAAAGGCCTGGCCATTGGATGCAACGGCGTCGTTTTCGGCATTTGGTCTTTCATGTGCTATTACGGTAGCAGACTCGTCATTTATCATGGAGCTAAAGGAGGGACAGTTTTTGCAGTCGGAGCAGCAATCGCCGTTGGTGGACTGGCATTAGGAGCGGGTTTATCTAACATGAAGTACTTTTCGGAGGCGGGGGCGGCAGCGGAGCGTATAAAGGAAGTGATAAAGAGGGTTCCGAAGATAGATTCTGACAACAAGGATGGGGAAATTCTGGAGACAGTTTACGGGGAAGTGGAATTTGACCGTGTAGAATTCGCATACCCATCAAGGCCAGAAAGTGGCATCCTAAACGGGTTGAGCCTGAAGATTCCTGCAGGGAAGAGAGTGGCGTTGGTGGGAGAAAGTGGTTCAGGAAAATCCACAGTGATAGCATTATTGCAACGTTTTTATGACCCTGTTGGGGGAGAGGTGCGTTTGGATGGGGTGGGGATTCAGAAGCTGCAGGTCAAGTGGCTTCGGTCACAGATGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTCGCGACCAGCATTAAAGAGAACATACTTTTCGGCAAAGAGGATGCCACGGAGGATCAAGTGGTGGAGGCTGCAAAAGCTGCCCATGCTCATAATTTCGTTTCGCTTCTGCCTCACGGTTACCATACACAGGTGGGAGAGAGAGGGATTCAGATGTCAGGGGGACAAAAACAGAGGATAGCAATTGCGAGGGCAATAATTAAGAAACCCCGAATTCTCCTTCTGGACGAAGCAACAAGCGCGCTGGACTCAGAGTCCGAGCGACTCGTCCAAGAAGCGTTGGACAACGCAGCCGCGGGTTGCACCGCCATCATCATCGCGCACCGCTTATCCACCATCCAAAACGCAGACCTCATCGCCGTCGTCGGAGGCGGCAAAATCATCGAGATGGGCTCGCACGACGAGCTCATCCAAAACGACACCGGCGCTTACGCCTCCGCATTCCGCCTCCAGCAACAAAAAATTGAAGAAAGCGCAGAAAAACAAACCGGTACTCCCGGGAGTGTTTTATGCACCACGTCGTCATCATTCACCGAAAACGTGGGATCTACTATTTCAGTAGGCCCCACGATACTCGGTGATAATAATAATGACGTGGTGGAAGGAAAGAAGAAGAAGAAGAAGGCAACAGCGCCATCGTTTCGGAGATTGGTGGCGCTGAGCGTCCCCGAGTGGAAGCACGTCGTTTTGGGGTGTCTGAACGCCACCGTGTTCGGTGCCGTTCAGCCGGTGTACGCGTTCACGATGGGGTCCACGATACTTTTGTATTTTCACACGGATCATGAGGAGATAGCGAGGAGGACGAGGATCTACTCGTTGGCCTTTCTGGGCCTCTTTGTGGTGTCTCTGCTTGCGAATATTGGGCAGCACTATTGCTTCGGTTACATGGGGGAATACTTGACCAAACGGGTCAGAGAGACCGTGCTTTCCAAAATCCTCACTTTCGAAGTTGGGTGGTTTGATTTGGACCAGAACTCCAGTGCCGCCATCTGCTCCAGACTCGCCAAAGATGCTAATGTGGTGAGGTCTCTAGTGGGGGATAGAATGGCATTGCTAGTACAAACATTTTCAGCAGTAATAACAGCCTACACGATGGGTCTTATCATCTCTTGGAGGCTTTCCATTGTTATGATAGCAGTGCAACCCATTATCATAGCATGCTTTTACACAAGGCGTGTCCTTCTCAAGAGCATGTCCAACAAGTCCGTCAAGGCCCAACAGCAAAGCAGCAATATAGCTTCCGAAGCAGTTTCGAACCTTAGAACGGTCACAGCCTTTTCTTCCCAGGACCGGATTCTCAAGATGCTTGAAGCGGCCCAACAAGGCCCAAGTCGCGAGAACATTCGGCAATCGTGGTTTGCAGGAATTGGGCTTGGATGCTCCCAGGGCCTTGCGTCTTGCATTTGGGCCTTGGATTTTTGGTATGGTGGGAAGCTTATCTCGTATGGGTACATAACAAGAAAGACATTCTTTGAGAGCTTCATGGTTTTGGTGAGCACGGGGAGGATCATTGCTGATGCGGGAAGCATGACCACGGATCTTGTTAGAGGTGCTGATGTTGTTGGCGATATTTTTGGGATCATTGACCGGTGTACAAAAATTGAGCCCGATGACCCAAATGGGTGCAAGTCGGAGAATTTAGTAGGTCAAATAGAGATTCATGATGTGCATTTTGCGTACCCTACTAGGCCTAACGTGGCTATCTTCCAAGGCTTCTCTATTAAAATCGAGGCAGGGAAATCAACGGCATTGGTGGGGCAAAGTGGGTCCGGGAAATCGACCATCATAGGACTAATAGAGAGGTTTTATGATCCACTTAAGGGGATGGTGACAATAGATGGCATAGACATAAAATCGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTTGTGAGTCAAGAGCCAACGTTGTTTGGTGGGACCATAAGGGAGAACATTGCATATGGAAGAAGTGAGAATAAGGTTGATGAGAGTGAGATCATAGAGGCAGCACGAGCAGCGAACGCTCATGATTTCATAGCTAGCATGAAGGAGGGGTACGAGACGTGGTGTGGGGAAAAAGGGGTGCAACTTTCAGGGGGTCAAAAGCAGAGGATAGCAATAGCGAGGGCAATATTGAGAAATCCCAAGGTGTTGCTGTTGGACGAGGCCACAAGCGCATTAGATGGTCAATCAGAGAAGGTGGTGCAAGATACGTTGATGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCACATAGGTTGAGCACCATTCACAATTGTGATGTTATTGCTGTGTTAGAAAAAGGGAGGGTGGTGGAGATTGGAACCCACTCGTCCTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCCTTGGTGAGCCTTCAGACGAGACATGCAACAACACCCAATAACACTAATTGTACTAAAGCTAGTAGTAGTACCCACTCTATCAATTGA 3807 0.4846 MGRDQKSVVAMVSQERKKKKNGSIGFGSIFMHADGKDLFLMILGTIGAVGEGLATPLVLYISSRMMNNIGSSSTMDGNTFIQNINKNAVAWLYLAGASFAVCFIEGYCWTRTSERQAARMRCRYLKAVLRQDVAYFDLHITSITEIITSVSSDSLVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGFIYGKTLMGLSSKIREEYNQAGTVVEQTISSIRTVYSFVGESKTMNAFSNALQGTVKLGLKQGWAKGLAIGCNGVVFGIWSFMCYYGSRLVIYHGAKGGTVFAVGAAIAVGGLALGAGLSNMKYFSEAGAAAERIKEVIKRVPKIDSDNKDGEILETVYGEVEFDRVEFAYPSRPESGILNGLSLKIPAGKRVALVGESGSGKSTVIALLQRFYDPVGGEVRLDGVGIQKLQVKWLRSQMGLVSQEPALFATSIKENILFGKEDATEDQVVEAAKAAHAHNFVSLLPHGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERLVQEALDNAAAGCTAIIIAHRLSTIQNADLIAVVGGGKIIEMGSHDELIQNDTGAYASAFRLQQQKIEESAEKQTGTPGSVLCTTSSSFTENVGSTISVGPTILGDNNNDVVEGKKKKKKATAPSFRRLVALSVPEWKHVVLGCLNATVFGAVQPVYAFTMGSTILLYFHTDHEEIARRTRIYSLAFLGLFVVSLLANIGQHYCFGYMGEYLTKRVRETVLSKILTFEVGWFDLDQNSSAAICSRLAKDANVVRSLVGDRMALLVQTFSAVITAYTMGLIISWRLSIVMIAVQPIIIACFYTRRVLLKSMSNKSVKAQQQSSNIASEAVSNLRTVTAFSSQDRILKMLEAAQQGPSRENIRQSWFAGIGLGCSQGLASCIWALDFWYGGKLISYGYITRKTFFESFMVLVSTGRIIADAGSMTTDLVRGADVVGDIFGIIDRCTKIEPDDPNGCKSENLVGQIEIHDVHFAYPTRPNVAIFQGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGMVTIDGIDIKSYNLKSLRKHIALVSQEPTLFGGTIRENIAYGRSENKVDESEIIEAARAANAHDFIASMKEGYETWCGEKGVQLSGGQKQRIAIARAILRNPKVLLLDEATSALDGQSEKVVQDTLMRVMIGRTSVVVAHRLSTIHNCDVIAVLEKGRVVEIGTHSSLLAKGPCGAYYSLVSLQTRHATTPNNTNCTKASSSTHSIN 1268
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01661 1268 FunFam ABC transporter B family member 4 994 1253 - -
Pumo5g01661 1268 Gene3D - 356 605 IPR027417 -
Pumo5g01661 1268 Gene3D - 994 1246 IPR027417 -
Pumo5g01661 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 331 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g01661 1268 CDD ABC_MTABC3_MDL1_MDL2 366 604 - -
Pumo5g01661 1268 CDD ABC_MTABC3_MDL1_MDL2 1004 1245 - -
Pumo5g01661 1268 SUPERFAMILY ABC transporter transmembrane region 33 350 IPR036640 GO:0005524|GO:0016020
Pumo5g01661 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 604 IPR027417 -
Pumo5g01661 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1242 IPR003439 GO:0005524
Pumo5g01661 1268 FunFam ABC transporter B family member 1 28 363 - -
Pumo5g01661 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 602 IPR003439 GO:0005524
Pumo5g01661 1268 Pfam ABC transporter 384 533 IPR003439 GO:0005524
Pumo5g01661 1268 Gene3D ABC transporter type 1, transmembrane domain 29 970 IPR036640 GO:0005524|GO:0016020
Pumo5g01661 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1245 IPR027417 -
Pumo5g01661 1268 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 987 - -
Pumo5g01661 1268 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524|GO:0016887
Pumo5g01661 1268 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Pumo5g01661 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 688 969 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g01661 1268 SUPERFAMILY ABC transporter transmembrane region 668 989 IPR036640 GO:0005524|GO:0016020
Pumo5g01661 1268 PANTHER ABC TRANSPORTER B FAMILY 14 739 IPR039421 -
Pumo5g01661 1268 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 339 - -
Pumo5g01661 1268 FunFam Putative ABC transporter B family member 8 646 992 - -
Pumo5g01661 1268 Gene3D ABC transporter type 1, transmembrane domain 976 1259 IPR036640 GO:0005524|GO:0016020
Pumo5g01661 1268 FunFam ABC transporter B family member 4 356 613 - -
Pumo5g01661 1268 SMART AAA_5 393 677 IPR003593 GO:0016887
Pumo5g01661 1268 SMART AAA_5 1031 1227 IPR003593 GO:0016887
Pumo5g01661 1268 Pfam ABC transporter transmembrane region 41 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g01661 1268 Pfam ABC transporter transmembrane region 683 952 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g01661 1268 Pfam ABC transporter 1023 1173 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo5g01661 Pumo-Chr5 43616788 43625863 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01661 11 1245 Calmodulin-binding Proteins AT2G36910 43.700 0.0 1022
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01661 K05658 - gmx:100809399 2157.49