Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g01661 | ATGGGTAGGGATCAGAAAAGTGTGGTGGCTATGGTTAGCCAGGAGAGAAAAAAGAAGAAAAATGGGTCTATTGGGTTTGGGTCCATTTTCATGCATGCCGATGGCAAAGATTTGTTTCTTATGATTTTAGGTACCATTGGAGCAGTTGGGGAAGGCTTGGCCACCCCTTTAGTGTTGTATATCAGTAGCCGCATGATGAATAACATTGGGAGTTCCTCTACCATGGATGGAAACACTTTCATCCAAAACATCAATAAGAATGCGGTGGCTTGGTTATATTTGGCTGGTGCCTCTTTTGCGGTTTGCTTCATCGAGGGTTATTGTTGGACAAGAACAAGCGAAAGACAAGCAGCGAGAATGAGATGCAGGTATCTGAAAGCAGTGCTCAGACAAGATGTCGCGTACTTTGATTTGCATATCACAAGTATTACAGAGATCATCACTAGCGTCTCCAGCGACAGCCTCGTAATTCAAGATGTTCTCAGCGAAAAAGTTCCGAATTTCTTGATGAACATTTCATTGTTCGTTGGGAGCTACATAGCGGCTTTTGCAATGTTGTGGAGGCTGGCCATTGTGGGGTTTCCTTTCGTGGTTCTTCTGGTGATCCCGGGTTTTATTTACGGCAAGACTTTGATGGGGTTGTCTAGTAAAATCAGAGAAGAGTATAATCAAGCTGGGACAGTGGTAGAACAAACAATTTCTTCCATCAGAACCGTTTATTCGTTTGTGGGGGAAAGCAAGACCATGAACGCTTTCTCAAACGCGCTTCAAGGGACGGTTAAGTTGGGCCTGAAACAAGGCTGGGCTAAAGGCCTGGCCATTGGATGCAACGGCGTCGTTTTCGGCATTTGGTCTTTCATGTGCTATTACGGTAGCAGACTCGTCATTTATCATGGAGCTAAAGGAGGGACAGTTTTTGCAGTCGGAGCAGCAATCGCCGTTGGTGGACTGGCATTAGGAGCGGGTTTATCTAACATGAAGTACTTTTCGGAGGCGGGGGCGGCAGCGGAGCGTATAAAGGAAGTGATAAAGAGGGTTCCGAAGATAGATTCTGACAACAAGGATGGGGAAATTCTGGAGACAGTTTACGGGGAAGTGGAATTTGACCGTGTAGAATTCGCATACCCATCAAGGCCAGAAAGTGGCATCCTAAACGGGTTGAGCCTGAAGATTCCTGCAGGGAAGAGAGTGGCGTTGGTGGGAGAAAGTGGTTCAGGAAAATCCACAGTGATAGCATTATTGCAACGTTTTTATGACCCTGTTGGGGGAGAGGTGCGTTTGGATGGGGTGGGGATTCAGAAGCTGCAGGTCAAGTGGCTTCGGTCACAGATGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTCGCGACCAGCATTAAAGAGAACATACTTTTCGGCAAAGAGGATGCCACGGAGGATCAAGTGGTGGAGGCTGCAAAAGCTGCCCATGCTCATAATTTCGTTTCGCTTCTGCCTCACGGTTACCATACACAGGTGGGAGAGAGAGGGATTCAGATGTCAGGGGGACAAAAACAGAGGATAGCAATTGCGAGGGCAATAATTAAGAAACCCCGAATTCTCCTTCTGGACGAAGCAACAAGCGCGCTGGACTCAGAGTCCGAGCGACTCGTCCAAGAAGCGTTGGACAACGCAGCCGCGGGTTGCACCGCCATCATCATCGCGCACCGCTTATCCACCATCCAAAACGCAGACCTCATCGCCGTCGTCGGAGGCGGCAAAATCATCGAGATGGGCTCGCACGACGAGCTCATCCAAAACGACACCGGCGCTTACGCCTCCGCATTCCGCCTCCAGCAACAAAAAATTGAAGAAAGCGCAGAAAAACAAACCGGTACTCCCGGGAGTGTTTTATGCACCACGTCGTCATCATTCACCGAAAACGTGGGATCTACTATTTCAGTAGGCCCCACGATACTCGGTGATAATAATAATGACGTGGTGGAAGGAAAGAAGAAGAAGAAGAAGGCAACAGCGCCATCGTTTCGGAGATTGGTGGCGCTGAGCGTCCCCGAGTGGAAGCACGTCGTTTTGGGGTGTCTGAACGCCACCGTGTTCGGTGCCGTTCAGCCGGTGTACGCGTTCACGATGGGGTCCACGATACTTTTGTATTTTCACACGGATCATGAGGAGATAGCGAGGAGGACGAGGATCTACTCGTTGGCCTTTCTGGGCCTCTTTGTGGTGTCTCTGCTTGCGAATATTGGGCAGCACTATTGCTTCGGTTACATGGGGGAATACTTGACCAAACGGGTCAGAGAGACCGTGCTTTCCAAAATCCTCACTTTCGAAGTTGGGTGGTTTGATTTGGACCAGAACTCCAGTGCCGCCATCTGCTCCAGACTCGCCAAAGATGCTAATGTGGTGAGGTCTCTAGTGGGGGATAGAATGGCATTGCTAGTACAAACATTTTCAGCAGTAATAACAGCCTACACGATGGGTCTTATCATCTCTTGGAGGCTTTCCATTGTTATGATAGCAGTGCAACCCATTATCATAGCATGCTTTTACACAAGGCGTGTCCTTCTCAAGAGCATGTCCAACAAGTCCGTCAAGGCCCAACAGCAAAGCAGCAATATAGCTTCCGAAGCAGTTTCGAACCTTAGAACGGTCACAGCCTTTTCTTCCCAGGACCGGATTCTCAAGATGCTTGAAGCGGCCCAACAAGGCCCAAGTCGCGAGAACATTCGGCAATCGTGGTTTGCAGGAATTGGGCTTGGATGCTCCCAGGGCCTTGCGTCTTGCATTTGGGCCTTGGATTTTTGGTATGGTGGGAAGCTTATCTCGTATGGGTACATAACAAGAAAGACATTCTTTGAGAGCTTCATGGTTTTGGTGAGCACGGGGAGGATCATTGCTGATGCGGGAAGCATGACCACGGATCTTGTTAGAGGTGCTGATGTTGTTGGCGATATTTTTGGGATCATTGACCGGTGTACAAAAATTGAGCCCGATGACCCAAATGGGTGCAAGTCGGAGAATTTAGTAGGTCAAATAGAGATTCATGATGTGCATTTTGCGTACCCTACTAGGCCTAACGTGGCTATCTTCCAAGGCTTCTCTATTAAAATCGAGGCAGGGAAATCAACGGCATTGGTGGGGCAAAGTGGGTCCGGGAAATCGACCATCATAGGACTAATAGAGAGGTTTTATGATCCACTTAAGGGGATGGTGACAATAGATGGCATAGACATAAAATCGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTTGTGAGTCAAGAGCCAACGTTGTTTGGTGGGACCATAAGGGAGAACATTGCATATGGAAGAAGTGAGAATAAGGTTGATGAGAGTGAGATCATAGAGGCAGCACGAGCAGCGAACGCTCATGATTTCATAGCTAGCATGAAGGAGGGGTACGAGACGTGGTGTGGGGAAAAAGGGGTGCAACTTTCAGGGGGTCAAAAGCAGAGGATAGCAATAGCGAGGGCAATATTGAGAAATCCCAAGGTGTTGCTGTTGGACGAGGCCACAAGCGCATTAGATGGTCAATCAGAGAAGGTGGTGCAAGATACGTTGATGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCACATAGGTTGAGCACCATTCACAATTGTGATGTTATTGCTGTGTTAGAAAAAGGGAGGGTGGTGGAGATTGGAACCCACTCGTCCTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCCTTGGTGAGCCTTCAGACGAGACATGCAACAACACCCAATAACACTAATTGTACTAAAGCTAGTAGTAGTACCCACTCTATCAATTGA | 3807 | 0.4846 | MGRDQKSVVAMVSQERKKKKNGSIGFGSIFMHADGKDLFLMILGTIGAVGEGLATPLVLYISSRMMNNIGSSSTMDGNTFIQNINKNAVAWLYLAGASFAVCFIEGYCWTRTSERQAARMRCRYLKAVLRQDVAYFDLHITSITEIITSVSSDSLVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGFIYGKTLMGLSSKIREEYNQAGTVVEQTISSIRTVYSFVGESKTMNAFSNALQGTVKLGLKQGWAKGLAIGCNGVVFGIWSFMCYYGSRLVIYHGAKGGTVFAVGAAIAVGGLALGAGLSNMKYFSEAGAAAERIKEVIKRVPKIDSDNKDGEILETVYGEVEFDRVEFAYPSRPESGILNGLSLKIPAGKRVALVGESGSGKSTVIALLQRFYDPVGGEVRLDGVGIQKLQVKWLRSQMGLVSQEPALFATSIKENILFGKEDATEDQVVEAAKAAHAHNFVSLLPHGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERLVQEALDNAAAGCTAIIIAHRLSTIQNADLIAVVGGGKIIEMGSHDELIQNDTGAYASAFRLQQQKIEESAEKQTGTPGSVLCTTSSSFTENVGSTISVGPTILGDNNNDVVEGKKKKKKATAPSFRRLVALSVPEWKHVVLGCLNATVFGAVQPVYAFTMGSTILLYFHTDHEEIARRTRIYSLAFLGLFVVSLLANIGQHYCFGYMGEYLTKRVRETVLSKILTFEVGWFDLDQNSSAAICSRLAKDANVVRSLVGDRMALLVQTFSAVITAYTMGLIISWRLSIVMIAVQPIIIACFYTRRVLLKSMSNKSVKAQQQSSNIASEAVSNLRTVTAFSSQDRILKMLEAAQQGPSRENIRQSWFAGIGLGCSQGLASCIWALDFWYGGKLISYGYITRKTFFESFMVLVSTGRIIADAGSMTTDLVRGADVVGDIFGIIDRCTKIEPDDPNGCKSENLVGQIEIHDVHFAYPTRPNVAIFQGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGMVTIDGIDIKSYNLKSLRKHIALVSQEPTLFGGTIRENIAYGRSENKVDESEIIEAARAANAHDFIASMKEGYETWCGEKGVQLSGGQKQRIAIARAILRNPKVLLLDEATSALDGQSEKVVQDTLMRVMIGRTSVVVAHRLSTIHNCDVIAVLEKGRVVEIGTHSSLLAKGPCGAYYSLVSLQTRHATTPNNTNCTKASSSTHSIN | 1268 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g01661 | 1268 | FunFam | ABC transporter B family member 4 | 994 | 1253 | - | - | |
Pumo5g01661 | 1268 | Gene3D | - | 356 | 605 | IPR027417 | - | |
Pumo5g01661 | 1268 | Gene3D | - | 994 | 1246 | IPR027417 | - | |
Pumo5g01661 | 1268 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 42 | 331 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pumo5g01661 | 1268 | CDD | ABC_MTABC3_MDL1_MDL2 | 366 | 604 | - | - | |
Pumo5g01661 | 1268 | CDD | ABC_MTABC3_MDL1_MDL2 | 1004 | 1245 | - | - | |
Pumo5g01661 | 1268 | SUPERFAMILY | ABC transporter transmembrane region | 33 | 350 | IPR036640 | GO:0005524|GO:0016020 | |
Pumo5g01661 | 1268 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 604 | IPR027417 | - | |
Pumo5g01661 | 1268 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1004 | 1242 | IPR003439 | GO:0005524 | |
Pumo5g01661 | 1268 | FunFam | ABC transporter B family member 1 | 28 | 363 | - | - | |
Pumo5g01661 | 1268 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 366 | 602 | IPR003439 | GO:0005524 | |
Pumo5g01661 | 1268 | Pfam | ABC transporter | 384 | 533 | IPR003439 | GO:0005524 | |
Pumo5g01661 | 1268 | Gene3D | ABC transporter type 1, transmembrane domain | 29 | 970 | IPR036640 | GO:0005524|GO:0016020 | |
Pumo5g01661 | 1268 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 996 | 1245 | IPR027417 | - | |
Pumo5g01661 | 1268 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 672 | 987 | - | - | |
Pumo5g01661 | 1268 | ProSitePatterns | ABC transporters family signature. | 505 | 519 | IPR017871 | GO:0005524|GO:0016887 | |
Pumo5g01661 | 1268 | ProSitePatterns | ABC transporters family signature. | 1145 | 1159 | IPR017871 | GO:0005524|GO:0016887 | |
Pumo5g01661 | 1268 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 688 | 969 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pumo5g01661 | 1268 | SUPERFAMILY | ABC transporter transmembrane region | 668 | 989 | IPR036640 | GO:0005524|GO:0016020 | |
Pumo5g01661 | 1268 | PANTHER | ABC TRANSPORTER B FAMILY | 14 | 739 | IPR039421 | - | |
Pumo5g01661 | 1268 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 41 | 339 | - | - | |
Pumo5g01661 | 1268 | FunFam | Putative ABC transporter B family member 8 | 646 | 992 | - | - | |
Pumo5g01661 | 1268 | Gene3D | ABC transporter type 1, transmembrane domain | 976 | 1259 | IPR036640 | GO:0005524|GO:0016020 | |
Pumo5g01661 | 1268 | FunFam | ABC transporter B family member 4 | 356 | 613 | - | - | |
Pumo5g01661 | 1268 | SMART | AAA_5 | 393 | 677 | IPR003593 | GO:0016887 | |
Pumo5g01661 | 1268 | SMART | AAA_5 | 1031 | 1227 | IPR003593 | GO:0016887 | |
Pumo5g01661 | 1268 | Pfam | ABC transporter transmembrane region | 41 | 308 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pumo5g01661 | 1268 | Pfam | ABC transporter transmembrane region | 683 | 952 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Pumo5g01661 | 1268 | Pfam | ABC transporter | 1023 | 1173 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g01661 | Pumo-Chr5 | 43616788 | 43625863 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g01661 | 11 | 1245 | Calmodulin-binding Proteins | AT2G36910 | 43.700 | 0.0 | 1022 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g01661 | K05658 | - | gmx:100809399 | 2157.49 |