LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g01649	ATGAAGTTCAACATTGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGATGACGATCAGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTTGGTGAGGAATTTAACGGCTATGTGTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTCCGACTTTTGCTTCACAGGGGAACTCCTTGCTTCCGTGGTTATGGAAGACGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGAGAGTGATTTGCCAGGATTGACTGACATTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGGGAAAAAGGTGAGCAAAGCTCCTAAGATACAGAGACTGGTCACTCCTCTTACACTCCAAAGAAAGAGGGCAAGGATTGCTGATAAGAAGAAGAGAATTGCCAAGGCAAAATCGGAGGCGGCAGAGTACCAGAAACTCCTAGCCTCCAGGTTGAAGGAGCAGAGAGATCGCCGCAGTGAGAGTTTGGCTAAGAGGAGATCCAGGCTTTCCAGTGCTACAAAGGCAGCTGTATAA	744	0.4772	MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFNGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSRLSSATKAAV	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g01649	247	Coils	Coil	189	216	-	-
	Pumo5g01649	247	MobiDBLite	consensus disorder prediction	222	237	-	-
	Pumo5g01649	247	Pfam	Ribosomal protein S6e	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g01649	247	PIRSF	RPS6e	1	247	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g01649	247	MobiDBLite	consensus disorder prediction	222	247	-	-
	Pumo5g01649	247	PANTHER	40S RIBOSOMAL PROTEIN S6	1	240	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g01649	247	SMART	Ribosomal_S6e_2	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g01649	247	ProSitePatterns	Ribosomal protein S6e signature.	52	63	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Pumo5g01649	247	Gene3D	-	133	234	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g01649	Pumo-Chr5	43373922	43376501	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo5g01649	1	242	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	73.967	5.32e-121	341

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g01649	K02991		-	gmx:547746	428.713