Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01642 ATGTCAACCACCGTAAGTTGTCGCTGGAGAATCATTCTTCAGCATCTTTCTAGTATTCATTCTCCTTCAATTTCCTTGTGGATCTGCCACTATGACTTCCTCACTAGTAAAGATCCAAGGCGAACAGCTACTCCACTTTGGCGTAATGGACCAGTTGATAAACCGGTGCTGTGTAACGCTTGTGGATCGCGATACAAGTTAAAAGGACACCTTGACAATTATTTCCCCAAGAACTTTAAAAATGTAAATTGTGGAAGCCATATTCTCAATGTTGAGAATGAGGACCAACTTTCAAACCATGTTTCAAATACAAGTGATGATGGAGACAGCAATAGGTCAACCCCAGATCAGGTCCATCATATATCACCACAAGATTTTGGGAACAAAATCCCTTCAAGGAAACGGTCACCGGTGGTGAACAAGCGGATGAAAATGACACCAATGGAGAAGTTCCAAAAGCAGCTTCTGAGTTTGTATAGAAGTGAAAGGCAACCAGAAGAGAGTGTATTGGTGGATAACGTGAGCAACTTCATACCCGAAAATGAGATAGGGCTTGGAGCCATTCTTCTTAAGACGGATGATGCTGCTGCAGCTTCTACAGATCCAGGATCAGCCACATGCTCCTCAACAGATCGTGAATCATCCACAACTGCACCTTGA 660 0.4318 MSTTVSCRWRIILQHLSSIHSPSISLWICHYDFLTSKDPRRTATPLWRNGPVDKPVLCNACGSRYKLKGHLDNYFPKNFKNVNCGSHILNVENEDQLSNHVSNTSDDGDSNRSTPDQVHHISPQDFGNKIPSRKRSPVVNKRMKMTPMEKFQKQLLSLYRSERQPEESVLVDNVSNFIPENEIGLGAILLKTDDAAAASTDPGSATCSSTDRESSTTAP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01642 219 Pfam GATA zinc finger 42 70 IPR000679 GO:0006355|GO:0043565
Pumo5g01642 219 ProSiteProfiles GATA-type zinc finger domain profile. 42 69 IPR000679 GO:0006355|GO:0043565
Pumo5g01642 219 MobiDBLite consensus disorder prediction 98 121 - -
Pumo5g01642 219 CDD ZnF_GATA 42 70 IPR000679 GO:0006355|GO:0043565
Pumo5g01642 219 SMART GATA_3 35 80 IPR000679 GO:0006355|GO:0043565
Pumo5g01642 219 MobiDBLite consensus disorder prediction 199 219 - -
Pumo5g01642 219 PANTHER OSJNBB0038F03.10 PROTEIN 43 204 IPR044589 -
Pumo5g01642 219 MobiDBLite consensus disorder prediction 98 140 - -
Pumo5g01642 219 Gene3D - 37 120 IPR013088 GO:0006355|GO:0008270
Pumo5g01642 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 42 74 - -
Pumo5g01642 219 MobiDBLite consensus disorder prediction 196 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01642 Pumo-Chr5 43173702 43179443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01642 42 76 C2C2-Gata Transcription Factor Family AT5G47140 74.286 1.75e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo5g01642 GATA 7.9e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01642 - - gsj:114423936 222.631