Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01623 ATGGGTCCAAACGTTGATTACTCATCGTTTGTGGCAAAACAAGCTGAGCAACTAAGAATAGACGGCAACAACTGCTTCAAGAAAGATCGTTTTGGAGCCGCCATCGATGCCTACACTGAGGCAATTACGCTGCGTCCCGATGTTCCGGTGTATTGGACCAATCGTGCTCTCTGCCATCTAAAGCGCAATGACTGGACCAGAGTAGAGGAAGACTGTGGTCAAGCTATTAAGCTTGACAACAATTTGGTTAAGGCCCACTATATGTTAGGTCTTGCATTGGTTCAGAGACAAGATTTTGCTAAAGGAATCTTAGAATTGCAGAAGGCTTTGGATCTGGATAGAGGTGCCCATCCTAAGGGCCAAATGGTAGAGGAAATATGGCAAGAGCTTGCAAAAGCAAAATACTTGGAGTGGGAACATTCATATACTAAGCGATCATGGGAACTGCAGAACTTGAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAACATTTTCTTGAATTCTCTCACATGGAAGGATTTATTGAAGATGCTACTACCCATTTGGAACAATTAAATGCTTTAGGAAGAGTGTTTAATAAAGTTGCAGAAAATGACATGCCTACCGAGGTGCCTGATTATCTATGCTGTAGAATCGCACTTGATATTTTTTGTGATCCTGTCATTACCCCAAGTGGACTTACATATGAGAGGACAGTGATTCTTGACCATCTTGAGAAGGTGGGTAAGTTTGATCCAGTCACCCGAGATCCCCTTGATCCATCACAGCTAATACCCAACTTAGCCATAAAGGAAGCAGTTCAGACATTCTTGGATAAACATGGGTGGGCATACAAAGATATATTAGAAAAAGATTATTAA 861 0.4181 MGPNVDYSSFVAKQAEQLRIDGNNCFKKDRFGAAIDAYTEAITLRPDVPVYWTNRALCHLKRNDWTRVEEDCGQAIKLDNNLVKAHYMLGLALVQRQDFAKGILELQKALDLDRGAHPKGQMVEEIWQELAKAKYLEWEHSYTKRSWELQNLKEACESALKEKHFLEFSHMEGFIEDATTHLEQLNALGRVFNKVAENDMPTEVPDYLCCRIALDIFCDPVITPSGLTYERTVILDHLEKVGKFDPVTRDPLDPSQLIPNLAIKEAVQTFLDKHGWAYKDILEKDY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01623 286 SUPERFAMILY TPR-like 13 133 IPR011990 GO:0005515
Pumo5g01623 286 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Pumo5g01623 286 Pfam Tetratricopeptide repeat 84 114 IPR019734 GO:0005515
Pumo5g01623 286 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Pumo5g01623 286 Gene3D Tetratricopeptide repeat domain 11 170 IPR011990 GO:0005515
Pumo5g01623 286 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Pumo5g01623 286 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Pumo5g01623 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Pumo5g01623 286 SMART tpr_5 15 48 IPR019734 GO:0005515
Pumo5g01623 286 SMART tpr_5 83 116 IPR019734 GO:0005515
Pumo5g01623 286 SMART tpr_5 49 82 IPR019734 GO:0005515
Pumo5g01623 286 SUPERFAMILY RING/U-box 197 281 - -
Pumo5g01623 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 11 279 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01623 Pumo-Chr5 42843325 42853123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01623 8 279 U-box Gene Family AT3G07370 64.469 2.31e-134 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01623 K09561 - gmx:100796519 449.899