Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01622 ATGGCCAAGCCAGGGGTGTTGGAGTCTGATCCAGGGGTGATGGTGAAGAAGGCCATAGAGTTGAAGAGGGAGCTGCAGAGGTTGGTGAAGTCCATTGTGGATGATGAGGATTGCAGCACTGAGACCATTGATCAGGCCAAAGAGACTCTCTCTGTTCTCAAGGAGTTGAAGCTCAGAAAGAGGTCTTCACTGTCTTTGAAGCTGCACAACAACAAGAGTAGTGTCACCTCTTGCCCTGATGAATTCAAGTGTCCTCTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGCTAAATGCTGGAAATAGGACTTGCCCTCGGACACATCAAGTCCTTACACACACTGTGCTTACACCAAATCATCTAATAAAGGAAATGATAGAACAATGGTCTAAAAACCAGGGGATTGAATTGTCAAATACTGTTCAATATATTGATGAGGAAGGTTTAAACGAAGCCGACCGCGAGCATTTTCTTTGTTTGCTTAAGAAAATGTCATCAACACTTTCTGATCAGAAGACAGCTGCAAAAGAACTGCGCCTGTTGACAAAGAAGCATCCTTGTTTCCGGGTACTTTTTTGCGATTCTGCAGATGCCATTCCCCAATTGCTTAAGCCAATTTGCAGGAGTGATTCTTTTGGTAGTATTCACCCTGATCTCCAAGAAGATGTAATCACAACACTCCTCAACATCTCTATTCATGATAACAACAAAAAGCTAGTGGCTGAAACTCCTATGGTAATTCCTCTCATTATGAGAGCATTGAGATCTGGAACAATTGAAACAAGAAGCAATGCTGCAGCTACGCTTTTCACTTTGTCAGCTCTTGACTCAAACAAGGAACTCATAGGAAAATCTGGAGCCTTGAAGCCATTGATTGACCTCTTGGAAGAAGGGCATCCCTCAGCCATGAAGGATGTTGCTTCAGCAATTTTTAACATATGTGTAATGCATGACAACAAGGCAAGAGCCGTGAAGGACGACGCAGTGAGGGTGATTTTGACAAAGATAAAGAAGCAGATTCATGTTGATGAGTTACTAGCTATCCTTGCACTGCTTTCAAGTCACCAGAGGGCTGTTCATGACATGGGAGATCTTGGAGCTGTCGCTAGCTTGCTCAGAATCATCAGAGAGACCTCGTGTGAACGCAACAAGGAGAATTGTGTAGCGATCCTTCAAACCATTTGTCTGTATGATAGATCAAAGTTGAAGGAAATAAGGGAAGAGGAGAACAGCCACAAAACAATCTCTGAGCTAGCACAGAATGGAACATCAAGGGCCAAGAGGAAAGCTAGTGGAATTCTTGAGAGACTGAACAGGGTTGTTAATATCACACACACTGCATAG 1389 0.4327 MAKPGVLESDPGVMVKKAIELKRELQRLVKSIVDDEDCSTETIDQAKETLSVLKELKLRKRSSLSLKLHNNKSSVTSCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLNAGNRTCPRTHQVLTHTVLTPNHLIKEMIEQWSKNQGIELSNTVQYIDEEGLNEADREHFLCLLKKMSSTLSDQKTAAKELRLLTKKHPCFRVLFCDSADAIPQLLKPICRSDSFGSIHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLIMRALRSGTIETRSNAAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPSAMKDVASAIFNICVMHDNKARAVKDDAVRVILTKIKKQIHVDELLAILALLSSHQRAVHDMGDLGAVASLLRIIRETSCERNKENCVAILQTICLYDRSKLKEIREEENSHKTISELAQNGTSRAKRKASGILERLNRVVNITHTA 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01622 462 Pfam Armadillo/beta-catenin-like repeat 292 329 IPR000225 GO:0005515
Pumo5g01622 462 SUPERFAMILY RING/U-box 69 152 - -
Pumo5g01622 462 CDD RING-Ubox_PUB 79 131 IPR045210 -
Pumo5g01622 462 SMART Ubox_2 81 144 IPR003613 GO:0004842|GO:0016567
Pumo5g01622 462 SMART arm_5 198 247 IPR000225 GO:0005515
Pumo5g01622 462 SMART arm_5 290 330 IPR000225 GO:0005515
Pumo5g01622 462 SMART arm_5 369 411 IPR000225 GO:0005515
Pumo5g01622 462 SMART arm_5 248 289 IPR000225 GO:0005515
Pumo5g01622 462 ProSiteProfiles U-box domain profile. 77 151 IPR003613 GO:0004842|GO:0016567
Pumo5g01622 462 FunFam RING-type E3 ubiquitin transferase 162 458 - -
Pumo5g01622 462 Gene3D - 164 354 IPR011989 -
Pumo5g01622 462 Gene3D - 355 457 IPR011989 -
Pumo5g01622 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 158 IPR013083 -
Pumo5g01622 462 Pfam U-box domain 79 148 IPR003613 GO:0004842|GO:0016567
Pumo5g01622 462 PANTHER U BOX DOMAIN-CONTAINING 16 452 - -
Pumo5g01622 462 FunFam RING-type E3 ubiquitin transferase 61 157 - -
Pumo5g01622 462 SUPERFAMILY ARM repeat 174 452 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01622 Pumo-Chr5 42808528 42812524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01622 140 462 U-box Gene Family AT3G07360 59.337 4.79e-127 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01622 - - gmx:100809408 818.535