Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01616 ATGGAAAACCAATTCTTTCTCAATGCTGGTGTGCCCCCTCAGCTGCATTTTGAGCCTTCACCACACCATCCTTGTCCACCCTCTTGGCAATCACTGTCTTCTGCCATGGTTTTGAATTGTTCAACTGAGCAGACCCAGGATTGCTTTTACTCCCCAACATGGGACAAGTCAACGGATCATGGTCTTCAGTTTGATTCAGCTCTGAGCTCAATGGTGTCCTCTCCTGCAGCTTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAGTTGATTGGAAAATTGGGAAACATTGGTGGTGGCTCTGATGAGATCTCACCTCATTCCCAGCCTTTGGTTGGTGCATCTTCCTACATCAATGGCAATAACAGCACCAACACTTCATGCTATAGCACCCCTTTGAGTTCTCCTCCAAAGGTGAACATGAACAAGATCCCCACAATGGTGAACCACTTGGTGAAGGAGGGCATGCCCCCCAGTTTGGGGACATCAATGTCTTTGAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGACTCAAAAATGCTGAATTGCCTCAGAGATCTTCTCCATTGGGAGAAAATGGGAAGCTTCCTAGAGTCTCAAGTAGTCCATCAGTCAAAGTGCTTGGATCTCAAATGGGTTCCCAGGAGAACAAGAATTCTCCATTACAAGACCTAATGGAAGTGACCGATTCTCCAGAGGAATCCACTATCTCTGAACAAACCCCAAATGGGGACACTGGGGTGAAACCTTCCCCTTATGTGAATTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAGGCCAAAGAAACTTCGACCTCTACCAACCCCCCTATGGCTGCTGAAGCTAGTGAAGACTCGAATGCGAAGCGCAGCAAGCCTAATGAAGGCGAGGGGAATGAAAATGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGGGGTAATAGCAATGCAAATGATGAGAAACAGAACAAGAGTAACTCAAAACCTCTTGAGCCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGATAGTCATAGTCTTGCAGAAAGAGTTCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAACAAGGTCACAGGCAAAGCACTAATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCAATAGATTCCTCAGCACCACCCTTTTATGGGCAACACCCTCAGCCAAACCCAGCAATCCACAACAACATTCCTAATGGAACTATGACCCACAACTCAGTGGACCCATTGGATACTGGACTGTGCCAAAACCTTGGCATGCATTTACCACACCTAAATGGGTTTAATGAAGGTGGCTCTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGGAAATGGGAAAACACCAATAAAATCTCAGAGTTTCAATGGTAATAAAGCAAAGAAAAAGATATGTTAA 1707 0.4452 MENQFFLNAGVPPQLHFEPSPHHPCPPSWQSLSSAMVLNCSTEQTQDCFYSPTWDKSTDHGLQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGGGSDEISPHSQPLVGASSYINGNNSTNTSCYSTPLSSPPKVNMNKIPTMVNHLVKEGMPPSLGTSMSLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRTTQLGLKNAELPQRSSPLGENGKLPRVSSSPSVKVLGSQMGSQENKNSPLQDLMEVTDSPEESTISEQTPNGDTGVKPSPYVNSRKRKGPSKGKAKETSTSTNPPMAAEASEDSNAKRSKPNEGEGNENGQVKAEEESKGGNSNANDEKQNKSNSKPLEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFPIDSSAPPFYGQHPQPNPAIHNNIPNGTMTHNSVDPLDTGLCQNLGMHLPHLNGFNEGGSQYPITFSEDDLHTIVQMGFGQTGNGKTPIKSQSFNGNKAKKKIC 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01616 568 MobiDBLite consensus disorder prediction 203 360 - -
Pumo5g01616 568 SMART finulus 378 428 IPR011598 GO:0046983
Pumo5g01616 568 MobiDBLite consensus disorder prediction 294 308 - -
Pumo5g01616 568 Coils Coil 419 439 - -
Pumo5g01616 568 FunFam Basic helix-loop-helix transcription factor 369 441 - -
Pumo5g01616 568 Pfam Helix-loop-helix DNA-binding domain 376 423 IPR011598 GO:0046983
Pumo5g01616 568 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 422 IPR011598 GO:0046983
Pumo5g01616 568 MobiDBLite consensus disorder prediction 221 277 - -
Pumo5g01616 568 Gene3D - 369 444 IPR036638 GO:0046983
Pumo5g01616 568 MobiDBLite consensus disorder prediction 312 342 - -
Pumo5g01616 568 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 370 441 IPR036638 GO:0046983
Pumo5g01616 568 CDD bHLH_AtBPE_like 362 447 - -
Pumo5g01616 568 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 266 475 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01616 Pumo-Chr5 42610538 42613667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01616 1 532 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.510 5.91e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g01616 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01616 - - gmx:100812081 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01616 5 42610538 42613667 Pumo7g02225 7 63002565 63005513 PCT