Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01613 ATGGCTGATGTAGGTGGAGGAGATGCAGTGAGACCGGTGGTAGTGTGTGATAACAAGTGTGGCTGCACAGTTCCATGCACTGGTGGTTCCACTTGCAGGTGCACGAGTGCAGGCACTGCTAATTCTGGAGGGGGTGATCACGTGACATGCTCGTGCGGAGAGCACTGTGGGTGCAATCCATGCTCATGTCCCAAGACTGCTGCTGCTGGAACTGGTTGCAGATGTGCCGCAGATTGCGCATGTATTTCTAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGAAAGAAGAGAAAGTATGAGCTTGGGCGCCAGGCAGCAAACACCAAGTTATCAAGCAACAAAACAATCCGGAGGATTCGTGTTAGAGGTGGCAATGTAAAATGGAGGGCTTTGAGGTTGGATACCGGCAATTACTCATGGGGTAGTGAAGCAGTAACTCGCAAGACTCGTATTCTAGATGTTGTGTACAATGCCTCAAACAATGAGCTTGTGCGAACTCAGACCCTGGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAGCACTATGGTGTTGAAATTGGTAGAAAAAAGAAAGTGGCAACCAAGAAGGACTCTACTGAGGAGGGTGAGGCTGCAGCTGCTGAAGAAACTAAGAAAAGTAACCATGTGCAGAGAAAACTTGAGAAACGCCAGAAAGATCGTAAACTCGATTCCCACATTGAAGAGCAATTTGGCGGTGGCCGATTGTTGGCCTGTATTTCTTCTCGCCCTGGACAATGTGGCAGGGCTGATGGGTACATTCTGGAAGGTAAGGAGCTGGAATTTTACATGAAGAAAATCCAGAGGAAGAAGGGAAAGGGTGCTGCTTAA 894 0.4911 MADVGGGDAVRPVVVCDNKCGCTVPCTGGSTCRCTSAGTANSGGGDHVTCSCGEHCGCNPCSCPKTAAAGTGCRCAADCACISRDSMHKRRATGGKKKAWRKKRKYELGRQAANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKVATKKDSTEEGEAAAAEETKKSNHVQRKLEKRQKDRKLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAA 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01613 297 NCBIfam ribosomal protein eS8 82 278 IPR001047 GO:0003735|GO:0005840|GO:0006412
Pumo5g01613 297 Gene3D - 241 294 - -
Pumo5g01613 297 Gene3D - 111 240 - -
Pumo5g01613 297 CDD Ribosomal_S8e_like 84 276 - -
Pumo5g01613 297 Pfam Ribosomal protein S8e 84 276 IPR022309 -
Pumo5g01613 297 PRINTS Plant PEC family metallothionein signature 30 37 IPR000316 GO:0008270
Pumo5g01613 297 PRINTS Plant PEC family metallothionein signature 15 23 IPR000316 GO:0008270
Pumo5g01613 297 PRINTS Plant PEC family metallothionein signature 23 29 IPR000316 GO:0008270
Pumo5g01613 297 PRINTS Plant PEC family metallothionein signature 58 65 IPR000316 GO:0008270
Pumo5g01613 297 FunFam 40S ribosomal protein S8 241 294 - -
Pumo5g01613 297 PANTHER 40S RIBOSOMAL PROTEIN S8 82 294 IPR001047 GO:0003735|GO:0005840|GO:0006412
Pumo5g01613 297 Pfam Plant PEC family metallothionein 16 83 IPR000316 GO:0008270
Pumo5g01613 297 MobiDBLite consensus disorder prediction 206 246 - -
Pumo5g01613 297 ProSitePatterns Ribosomal protein S8e signature. 90 109 IPR018283 GO:0003735|GO:0005840|GO:0006412
Pumo5g01613 297 FunFam 40S ribosomal protein S8 111 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01613 Pumo-Chr5 42521384 42537736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01613 82 285 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.804 5.61e-125 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01613 K02995 - gmx:100500112 403.675