Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01577 ATGACTTTTTATGTTACACACAGGTTGTTAAGGAACAGGGTTTCAGCCCAACAAGCCCATGAAAGAAAAAAGGTGTATGTAAATGACTTGGAATTAAGAGCTAAAGAGTTGGAAGACGAGAATACCAAGTTAGAAGAGCGTATTTCGACCTTGATCAATGAGAACACTATGCTCCGCAAGGTTCTTATGAACACCAGGCCCAAAGTTGATGAGAGCAATGAAGCGTAG 228 0.4079 MTFYVTHRLLRNRVSAQQAHERKKVYVNDLELRAKELEDENTKLEERISTLINENTMLRKVLMNTRPKVDESNEA 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01577 75 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 8 72 IPR044280 GO:0000981|GO:0045944
Pumo5g01577 75 Coils Coil 20 54 - -
Pumo5g01577 75 Gene3D Single helix bin 23 64 - -
Pumo5g01577 75 SMART brlzneu 5 64 IPR004827 GO:0003700|GO:0006355
Pumo5g01577 75 Pfam bZIP transcription factor 6 60 IPR004827 GO:0003700|GO:0006355
Pumo5g01577 75 CDD bZIP_HY5-like 8 55 - -
Pumo5g01577 75 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 8 65 IPR004827 GO:0003700|GO:0006355
Pumo5g01577 75 SUPERFAMILY Leucine zipper domain 7 63 IPR046347 GO:0003700|GO:0006355
Pumo5g01577 75 FunFam Transcription factor HY5 23 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01577 Pumo-Chr5 41262672 41263040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01577 8 71 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 76.562 2.29e-29 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo5g01577 bZIP_1 1.3e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01577 K16241 - aof:109831466 115.931