Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01550 ATGTGTGTGATGGAAGGTCGCCGGAGGGTAACGCTACATGAACAAATGTCAGCTTCCGATCACAGCCGAGCCCGAGAGCTAGCCGGCTTGACCCTTGACGACGTGTTAGCGAACCAGAAGAGACCTTTCTCAGCGCCACCCGGCCAACAACCACCCAAGAGCCGAACCCTACTTGACATCATCAAAGAAGACGAGAGCAACAAGAAGGACCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGGCTGAAGCGCGCAGGCTCAGCTTGGACATCGTCAATTCATATCCCGACTTCGGATGTTCCTATCCCTAACCCGAATAGCAGAACCTTTACTCAGTTTGGTCGACGCAACTCGGTCCGATTCCCGACTCAGACTCAGACTCAGACTCAGATTCAGACTCACTCCGACTCGGACATGTCATCTCACTACGACGCTCACCAAGTCGAAGACCTCGATCCCACCGCCGACGACTCCGGTTCTCCGGCCACCGCGCCGGCCGCCGCCCGCGCCCAGTTCGCCCGCCGCGGCTCCACCCGCTTCGCCGGCGACGCCTCCGAGAACAACACCGCCGGCACGCTCCGGCCGCAGCTCTCGCGGCGGAACTCCGCCAACATGCCGTCGGCGGAGCCCTACAAGCGGGGCCGCGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGAGGCCGACGGCGAGGACGGCGAGAAGCCCGGGGAGGGGAGGGCGCTGTCGGCGAGGGAGGCGGTGGCGGCGCAGGAGGCGGCGGAAGCGGCGGCGGCGGAGGCGGAGGCAGCGGAGGCCGCGGAGCAGGCGCCGGTGACGATGTCGCTGATGGACTTGCTGGAGGAGACCGATAGGGAGATGGGGCTTGAAGGGTCAAGGTATATATTGAGTGATGATGAGGATTTTGATGAGGATGAAGATGAAGATGATGAAGATGATGAGAATGGAGAGGGTTCCATGGAACACACTTGCTGTGTTTGCATGGTGAGGCATAAGGCTGCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGCTCAAGGGAGCTTATGGTTAGTAGGGGGAATTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGACATTTTCTGA 1122 0.5927 MCVMEGRRRVTLHEQMSASDHSRARELAGLTLDDVLANQKRPFSAPPGQQPPKSRTLLDIIKEDESNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDVPIPNPNSRTFTQFGRRNSVRFPTQTQTQTQIQTHSDSDMSSHYDAHQVEDLDPTADDSGSPATAPAAARAQFARRGSTRFAGDASENNTAGTLRPQLSRRNSANMPSAEPYKRGRVVTFRDSFDDEEADGEDGEKPGEGRALSAREAVAAQEAAEAAAAEAEAAEAAEQAPVTMSLMDLLEETDREMGLEGSRYILSDDEDFDEDEDEDDEDDENGEGSMEHTCCVCMVRHKAAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILDIF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01550 373 SUPERFAMILY RING/U-box 324 369 - -
Pumo5g01550 373 PANTHER OS01G0917900 PROTEIN 24 373 - -
Pumo5g01550 373 MobiDBLite consensus disorder prediction 121 139 - -
Pumo5g01550 373 MobiDBLite consensus disorder prediction 294 318 - -
Pumo5g01550 373 MobiDBLite consensus disorder prediction 298 318 - -
Pumo5g01550 373 MobiDBLite consensus disorder prediction 182 206 - -
Pumo5g01550 373 Coils Coil 245 271 - -
Pumo5g01550 373 MobiDBLite consensus disorder prediction 140 154 - -
Pumo5g01550 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 373 IPR013083 -
Pumo5g01550 373 ProSiteProfiles Zinc finger RING-type profile. 325 363 IPR001841 -
Pumo5g01550 373 CDD RING-HC 324 362 - -
Pumo5g01550 373 SMART ring_2 325 362 IPR001841 -
Pumo5g01550 373 Pfam Zinc finger, C3HC4 type (RING finger) 322 366 - -
Pumo5g01550 373 MobiDBLite consensus disorder prediction 121 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01550 Pumo-Chr5 40401725 40404751 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01550 22 373 C3H Transcription Factor Family AT3G07120 35.825 5.20e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01550 - - gmx:100795449 536.954