Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01545 ATGTGTGTGATGGAAGGTCGCCGGAGGGTAACGCTACATGAACAAATGTCAGCTTCCGATCACAGCCGAGCCCGAGAGCTAGCCGGCTTGACCCTTGACGACGTGTTAGCGAACCAGAAGAGACCTTTCTCAGCGCCACCCGGCCAACAACCACCCAAGAGCCGAACCCTACTTGACATCATCAAAGAAGACGAGAGCAACAAGAAGGACCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGGCTGAAGCGCGCAGGCTCAGCTTGGACATCGTCAATTCATATCCCTACTTCGGATGTTCCTATCCCTAACCCGAATAGCAGAACCTTTACTCAGTTTGGTCGACGCAACTCGGTCCGATTCCCGACTCAGACTCAGACTCAGATTCAGACTCACTCCGACTCGGACATGTCATCTCACTACGACGCTCACCAAGTCGAAGACCTCGACCCCACCGCCGATGACTCCGGTTCTCCGGCCACGGCGCCGGCGACGGCGCCGGCCACAGGCCGCGCCCAGTTCGCCCGCCGCGGCTCCACCCGCTTCGCCGGCGACGCCTCCGAGAACAACACCGCCGGCACGCTCCGGCCGCAGCTCTCGCGGCGGAACTCCGCCAACATGCCGTCGGCGGAGCCCTACAAGCGGAGCCGCGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGAGGCCGACGGCGAGGACGGCGAGAAGCCCGGGGAGGGGAGGGCGCTGTCGGCGAGGGAGGCGGTGGCGGCGCAGGAGGCGGCGGAAGCGGCGGCGGCGGAGGCGGAGGCAGCGGAGGCCGCGGAGCAGGCGCCGGTGACGATGTCGCTGATGGACTTGCTGGAGGAGACTGATAGGGAGATGGGGCTTGAAGGGTCAAGGTATATATTGAGTGATGATGAGGATTTTGATGAGGATGAAGATGAAGATGATGAAGATGATGAGAATGGAGAGGGTTCCATGGAACACACTTGCTGTGTTTGCATGGTGAGGCATAAGGCTGCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGCTCAAGGGAGCTTATGGTTAGTAGGGGGAATTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGACATTTTCTGA 1128 0.5922 MCVMEGRRRVTLHEQMSASDHSRARELAGLTLDDVLANQKRPFSAPPGQQPPKSRTLLDIIKEDESNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDVPIPNPNSRTFTQFGRRNSVRFPTQTQTQIQTHSDSDMSSHYDAHQVEDLDPTADDSGSPATAPATAPATGRAQFARRGSTRFAGDASENNTAGTLRPQLSRRNSANMPSAEPYKRSRVVTFRDSFDDEEADGEDGEKPGEGRALSAREAVAAQEAAEAAAAEAEAAEAAEQAPVTMSLMDLLEETDREMGLEGSRYILSDDEDFDEDEDEDDEDDENGEGSMEHTCCVCMVRHKAAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILDIF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01545 375 MobiDBLite consensus disorder prediction 138 152 - -
Pumo5g01545 375 MobiDBLite consensus disorder prediction 100 251 - -
Pumo5g01545 375 CDD RING-HC 326 364 - -
Pumo5g01545 375 MobiDBLite consensus disorder prediction 100 137 - -
Pumo5g01545 375 ProSiteProfiles Zinc finger RING-type profile. 327 365 IPR001841 -
Pumo5g01545 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 375 IPR013083 -
Pumo5g01545 375 MobiDBLite consensus disorder prediction 296 320 - -
Pumo5g01545 375 MobiDBLite consensus disorder prediction 300 320 - -
Pumo5g01545 375 MobiDBLite consensus disorder prediction 184 211 - -
Pumo5g01545 375 Coils Coil 247 273 - -
Pumo5g01545 375 SMART ring_2 327 364 IPR001841 -
Pumo5g01545 375 Pfam Zinc finger, C3HC4 type (RING finger) 324 368 - -
Pumo5g01545 375 PANTHER OS01G0917900 PROTEIN 24 375 - -
Pumo5g01545 375 SUPERFAMILY RING/U-box 326 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01545 Pumo-Chr5 40295337 40298291 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01545 22 375 C3H Transcription Factor Family AT3G07120 35.897 1.45e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01545 - - gmx:100795449 543.888