Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01536 ATGTCGTGGACCGGGAAACTGCAAGATGGACAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAATAGTGGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTTTTAGGTTGCTCTGTTGAAGGTGATGAAAAGATGTTGATATATGAATACATGCCAAACAAAAGTTTGGACGTGTTTATTTTCGATCCATCAAAAAGTAAACTGCTAGATTGGAGGAAGCGTTGTAGCATAATAGAAGGAACAGCTCGAGGATTGCTTTATCTTCACAGAGACTCCAGATTAAGAATCATACACAGAGATTTGAAGACAAGTAATATCTTGTTAGATGAAGAGCTAAATCCAAAAATATCAGACTTTGGTTTGGCTAGAATCTTTGGAGGGAGTGAAAATCAGGCCAATACTAACAGGGTTGTTGGAACATATGGCTATATGTCCCCTGAATATGCAATGCAAGGACTATTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGGTACTAGAGATTGTTAGTGGAAGAAGAAACTCAAGCTTTTATGACAATGAGAATGCTCTTAGCCTTTTAGGATTTGCCTGGATACAATGGAAGGAAGGCAATATATTATCTTTAATAGATCCAGCAATATATGATGTTGGTCATCATAAAGATATTTTAAGGTGCATACACATAGGACTTCTATGTGTACAAGAACTTGCTGTAGACAGACCCACAATGGCTGCAGTAATTTCTATGCATAACAGTGAGGTTTCCTTTCTTCCTCCTCCAAGTCAACCAGCATTCATCCAGAGCCAAGATATGTTGAATTCGGTTTCAACTAAAGAAAGTAATAGATTTTACTCCGTCAATGCTATTACTATTACAGATATCCGAGGTAGATAG 921 0.3746 MSWTGKLQDGQEIAVKRLSRASGQGLEEFMNEIVVISKLQHRNLVRLLGCSVEGDEKMLIYEYMPNKSLDVFIFDPSKSKLLDWRKRCSIIEGTARGLLYLHRDSRLRIIHRDLKTSNILLDEELNPKISDFGLARIFGGSENQANTNRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLVLEIVSGRRNSSFYDNENALSLLGFAWIQWKEGNILSLIDPAIYDVGHHKDILRCIHIGLLCVQELAVDRPTMAAVISMHNSEVSFLPPPSQPAFIQSQDMLNSVSTKESNRFYSVNAITITDIRGR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01536 306 CDD STKc_IRAK 5 258 - -
Pumo5g01536 306 FunFam Uncharacterized protein 1 63 - -
Pumo5g01536 306 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 64 267 - -
Pumo5g01536 306 SMART serkin_6 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01536 306 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 282 - -
Pumo5g01536 306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
Pumo5g01536 306 Gene3D Phosphorylase Kinase; domain 1 1 63 - -
Pumo5g01536 306 SUPERFAMILY Protein kinase-like (PK-like) 7 290 IPR011009 -
Pumo5g01536 306 Gene3D Transferase(Phosphotransferase) domain 1 64 265 - -
Pumo5g01536 306 Pfam Protein tyrosine and serine/threonine kinase 8 198 IPR001245 GO:0004672|GO:0006468
Pumo5g01536 306 ProSiteProfiles Protein kinase domain profile. 1 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01536 Pumo-Chr5 39866903 39870429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01536 3 277 Receptor kinase-like Gene Family AT4G23230 59.058 6.09e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo5g01536 PK_Tyr_Ser-Thr 5.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01536 - - gsj:114424251 526.168