Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01535 ATGAAAGAGAGAGAGTGTTGTTGCGCTGAAAAGGGGAAACTGCAAGATGGACAGGATATAGCAGTTAAAAGACTTTCTAGAGCCTCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTAGTGGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTTTTTGGTTGCTGTGTTGAAGGTGATGAAAAGATGTTGATATATGAATACATGCCAAACAAAAGTTTGGATGTGTTTATGTTTGATCCATCAAAAAGTAAACTGCTAGATTGGAGGAAGCGTTGTAGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCACAGAGACTCCAGATTAAGAATCATACACAGAGATTTGAAGACAAGTAATATCTTGTTAGATGAAGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAAGGAGTGAAAATCAGGCCAATACTAACAGGGTAGTTGGAACCTATGGCTATATGTCCCCAGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGGTATTAGAGATTGTTTGTGGAAGAAGAAACTCAAGCTTTTATGACAATGAGAATGCTCTTAGCCTTTTAGGATTTGCCTGGATACAATGGAAGGAAGGCAATATATTATCTTTAATAGATCCAGCAATATATGATGTTAGTCATCATAAAGATATTTTAAGGTGCATACACATAGGACTTCTATGTGTACAAGAACATGCTGTAGACAGACCCACAATGGCTGCAGTAATTTCTATGCATAACAGTGAGGTTTCGTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCAGAGCCAAGATATGTTGAATTCAGTTTCATCTAAAGAAAGTAATAGATTTTACTCCATCAATGCTGTTAGTATTACAGATATCCGAGGTAGATAG 942 0.3715 MKERECCCAEKGKLQDGQDIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLFGCCVEGDEKMLIYEYMPNKSLDVFMFDPSKSKLLDWRKRCSIIEGIARGLLYLHRDSRLRIIHRDLKTSNILLDEELNPKISDFGMARIFGRSENQANTNRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLVLEIVCGRRNSSFYDNENALSLLGFAWIQWKEGNILSLIDPAIYDVSHHKDILRCIHIGLLCVQEHAVDRPTMAAVISMHNSEVSFLPPPSQPAFIQSQDMLNSVSSKESNRFYSINAVSITDIRGR 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01535 313 Gene3D Phosphorylase Kinase; domain 1 3 70 - -
Pumo5g01535 313 FunFam Uncharacterized protein 5 70 - -
Pumo5g01535 313 ProSiteProfiles Protein kinase domain profile. 1 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01535 313 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 71 274 - -
Pumo5g01535 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Pumo5g01535 313 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 289 - -
Pumo5g01535 313 Gene3D Transferase(Phosphotransferase) domain 1 71 272 - -
Pumo5g01535 313 SMART serkin_6 5 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01535 313 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Pumo5g01535 313 Pfam Protein tyrosine and serine/threonine kinase 13 205 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01535 Pumo-Chr5 39794302 39798111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01535 11 313 Receptor kinase-like Gene Family AT4G11530 56.958 6.20e-121 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo5g01535 PK_Tyr_Ser-Thr 6.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01535 - - gsj:114424251 534.258