Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01516 ATGTCCCCAGCAGGTTCATCAAGATGGAGCCCTACCACAGAACAACTCATGATCTTGGAGGAACTGTACAGGAGTGGCATTAGAACTCCTAGTGCCTCTCAAATTCAGCAAATAACCACACACCTTTCTTTCTATGGCAGGATAGAAGGAAAGAATGTGTTCTACTGGTTTCAGAACCACAAGGCTAGGGATAGACAGAAGCTCAGAAGGAAACTCAGCAAGCAACTGCAGCTACAGCAACAACAACTCCAACTCCATCATCATTGCCAACTCAATCAAGATATCACTAACCATTTTGTTGGTGGCTTTGGTTATAGTACTCCTCGTTCTACCACCCAGGATTTTCCCTTTTTTAACTCACCTAGCTTGCTTTTTCAGGGAGGAGCTTCAAACACATCAGAACAAGCATTGAGTTGCAAATGGAATAATGTGCATAGCCCTCAAAGTAATTTGGTGGAGAATAAAGAGATGACATTCTGCAACTATGGTTGCACACTTGTGGATGTTAATAATCAAGCATCTTCATGTTGCACTACTCGACCTCTCAAGACTCTTGATCTCTTTCCACTCACAACTACCAGCAGAATCAATGAAGATTCATGCACCACACCACCCAAGTAG 621 0.43 MSPAGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLSKQLQLQQQQLQLHHHCQLNQDITNHFVGGFGYSTPRSTTQDFPFFNSPSLLFQGGASNTSEQALSCKWNNVHSPQSNLVENKEMTFCNYGCTLVDVNNQASSCCTTRPLKTLDLFPLTTTSRINEDSCTTPPK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01516 206 FunFam WUSCHEL-related homeobox 4 6 73 - -
Pumo5g01516 206 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Pumo5g01516 206 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 197 IPR044555 GO:0003700|GO:0099402
Pumo5g01516 206 CDD homeodomain 8 67 IPR001356 GO:0003677
Pumo5g01516 206 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Pumo5g01516 206 Gene3D - 3 67 - -
Pumo5g01516 206 SUPERFAMILY Homeodomain-like 7 66 IPR009057 -
Pumo5g01516 206 SMART HOX_1 4 71 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01516 Pumo-Chr5 39337358 39338536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01516 1 74 Wox Gene Family AT2G28610 83.784 7.54e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo5g01516 Homeodomain 6.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01516 - - gmx:102663963 331.257