Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01503 ATGGCTGAGGTGGTGAAATCAGAGGAGTGTTGTCTGGAGAATAAGCAATCTACTGCTGCTTCTTGCTCCTCTGTATCTGAAGGCAGTGGCAGTGCAATTCACAGGTCTCCAGGGATATGTAGCCCTGCATCCACATCGCCCTCACATCGGAGGACCACCGGCCCTATAAGGCGTGCCAAGGGTGGTTGGACAGCACAGGAGGATGAGACATTAAGGAATGCTGTTGCAGTTTTTAAGGGAAAGAGTTGGAAGAAAATAGGGATGGCAAAGTGTACCCGGACCCTATGGGTACCCGCAAAAATATCCGCAAGCAGATCGGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAGTGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACACAGGAGGAGGATGATAAAATTGTTGAACTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTACCTGGTCGAATAGGCAAACAATGTCGAGAGCGGTGGCACAATCATCTTAACCCTGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAATTAGCCCTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCATGGAAGGACTGATAATGCAATAAAGAATCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAGCTACAGGAAGACTTCCACCAATTCCCAAGAATAGTCCACAAGTTGCTATCAAAGATACAATTAGACGATCTGCTAGTAAATCAATACTTGTTTGTTCAAATAATAAAGAATTAAATGCAGCTGTTGAAACATCATCTGAAACTACAGCCATTAGTAAGCTAGATGACAGTGGCAGGAATCAGTTTGAGTCCTCAGGCACGGTTAGAGAAGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAATCTGCCGATTCTGACTGTGTAGAATGCAAGCCTGGACCATCCAACATCGATCTTAGCTGTAGCAACTCAGAACAAGTGTCAAGAGCTAATTTTGGAACAACTTTTGGGCCAAGATCTGAGAATTCTGGACTCAATGGAAACTCAACTTTTGATCATTGTACAAACAATGGTGACATGAGCAGTACCAGGTTAATTGGAACATCTTCGCAAGAAAGTCCAACCTGCGGTTCTTTGTGTTATGAGCCACCACAGTTAGATGGTTCAGTTCCCATAGATTCTCTTTATTTCAATTATATTTGCCAGCAGATTGAGTACTGTCCGAGTCCAACGATGTCACCTGTTGGTTTCTTCACTCCACCTCGTGTGAAGGGTAGTGAATTATGCACTGAGACACCTGAATCAATATTGAAAAAGGCTGCTAATACTTTTCCAAATACTCCTTCCATATTGAGGAGGAGAAAAACTGGAGTCCAACCACTCACCAGTCCTAGTAAAGTTTTGAAGGTAGATAATGATCCACGTACTTCTAGTGAAACAGAGAGAGCCAATGATGATTCTGGTTCTGGGCGTTTCTCCAGGAGTCCAGCAAACCATGGCAATGGGATTGACATTCCCAATAATAAGGCATTCAATGCATCTCCTCCATACAGGTTAAGATCCAAGCGAACAGCGATTGTCAAGTCAGTGGAGAAACAACTGGAGTTTGCATTTGACAAAGAGAAGAATGATGACAAGAGGAGCAATGTGATGACCGAAGATTGTCTGCATGAAACAAAATTGGTTGTGACATAG 1746 0.4278 MAEVVKSEECCLENKQSTAASCSSVSEGSGSAIHRSPGICSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAVFKGKSWKKIGMAKCTRTLWVPAKISASRSAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLHGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKNSPQVAIKDTIRRSASKSILVCSNNKELNAAVETSSETTAISKLDDSGRNQFESSGTVREVGDSSSVPANESADSDCVECKPGPSNIDLSCSNSEQVSRANFGTTFGPRSENSGLNGNSTFDHCTNNGDMSSTRLIGTSSQESPTCGSLCYEPPQLDGSVPIDSLYFNYICQQIEYCPSPTMSPVGFFTPPRVKGSELCTETPESILKKAANTFPNTPSILRRRKTGVQPLTSPSKVLKVDNDPRTSSETERANDDSGSGRFSRSPANHGNGIDIPNNKAFNASPPYRLRSKRTAIVKSVEKQLEFAFDKEKNDDKRSNVMTEDCLHETKLVVT 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01503 581 MobiDBLite consensus disorder prediction 464 488 - -
Pumo5g01503 581 ProSiteProfiles Myb-like domain profile. 55 126 IPR001005 -
Pumo5g01503 581 MobiDBLite consensus disorder prediction 38 52 - -
Pumo5g01503 581 Gene3D - 185 260 - -
Pumo5g01503 581 ProSiteProfiles Myb-like domain profile. 179 229 IPR001005 -
Pumo5g01503 581 SUPERFAMILY Homeodomain-like 129 225 IPR009057 -
Pumo5g01503 581 MobiDBLite consensus disorder prediction 289 326 - -
Pumo5g01503 581 CDD SANT 134 178 IPR001005 -
Pumo5g01503 581 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 182 IPR017930 -
Pumo5g01503 581 CDD SANT 186 229 IPR001005 -
Pumo5g01503 581 FunFam Transcription factor MYB3R-2 185 250 - -
Pumo5g01503 581 SMART sant 59 128 IPR001005 -
Pumo5g01503 581 SMART sant 183 231 IPR001005 -
Pumo5g01503 581 SMART sant 131 180 IPR001005 -
Pumo5g01503 581 Pfam Myb-like DNA-binding domain 60 126 IPR001005 -
Pumo5g01503 581 FunFam Transcriptional activator Myb isoform A 131 184 - -
Pumo5g01503 581 Gene3D - 59 131 - -
Pumo5g01503 581 MobiDBLite consensus disorder prediction 22 63 - -
Pumo5g01503 581 MobiDBLite consensus disorder prediction 506 525 - -
Pumo5g01503 581 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 233 IPR017930 -
Pumo5g01503 581 SUPERFAMILY Homeodomain-like 61 136 IPR009057 -
Pumo5g01503 581 PANTHER MYB PROTEIN-RELATED 60 152 - -
Pumo5g01503 581 CDD SANT 63 126 IPR001005 -
Pumo5g01503 581 Pfam Myb-like DNA-binding domain 135 193 - -
Pumo5g01503 581 Gene3D - 132 183 - -
Pumo5g01503 581 ProSiteProfiles Myb-like domain profile. 127 178 IPR001005 -
Pumo5g01503 581 MobiDBLite consensus disorder prediction 289 319 - -
Pumo5g01503 581 MobiDBLite consensus disorder prediction 464 526 - -
Pumo5g01503 581 MobiDBLite consensus disorder prediction 489 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01503 Pumo-Chr5 39148256 39164945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01503 5 573 MYB Transcription Factor Family AT3G09370 46.724 2.39e-154 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g01503 Myb_DNA-binding 2.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01503 K09422 - gmx:778081 1048.88