Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01499 ATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTACTACGCGCATATGTCAAACAGTATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACGCCTCTTAACAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAACCTGGCATTAAGAAAGGATCTCTTACTGAGGAAGAGCAGCGTATTGTCATCAACCTTCAAGCAACACACGGCAACAAGTGGAAGAAAATCGCAGCACAAGTCCCTGGTCGCACTGCGAAGAGGTTGGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAAAGGGAGACAAAGGGGAATAGCTGCACCATCGACCCGATTAACGACAGCAAGTACGAGCATATCCTTGAGAGTTTTGCAGAGAAGCTAGTGAAAGAGAGGCCCTCACCATCATTTGTTATGGCTACTTCCAACAGTTCTTTTCTGCACACCGATGCACCGGCTCCTGCACCAGCCTTGCTTCCTTCTTGGCTTTCCAATTCCAATGGCACTGCACCTGTGAGGCCACCATCCCCTTCTGTGACTCTTAGTCTTTCTCCCTCGACGGTGGCAGCGCCTCCTCCATGGTTGCAGCCCGTGAGAGGGCCGGACAATGCTGCTCCTCTTGTTCTGGGGAATGTGGCGCCTCACGGGGCTGTTCTGGCATTTGGTGAGAACATGGTGATGTCTGAGTTGGTGGAGTGCTGCAAGGAGTTGGATGAAGTGCATCATGCTTTGGCCACACATAAGAAGGAGGCCGCGTGGCGGTTAAGTAGGGTGGAGCTGCAGCTGGAGTCCGAGAAGGCCGGCCGAAGGAGGGAGAAGATGGAGGAAATCGAAGCGAAGATCAAAGCGCTGAGGGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAATACAGGGAGCAGTTGGCAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACTTGCGCCTTACCAAGTTTCTAGAACAGGTAGGGTGCAGATCAAGGCTCACTGAACCAAATGGAAGATAG 1071 0.5154 MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRIVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNSCTIDPINDSKYEHILESFAEKLVKERPSPSFVMATSNSSFLHTDAPAPAPALLPSWLSNSNGTAPVRPPSPSVTLSLSPSTVAAPPPWLQPVRGPDNAAPLVLGNVAPHGAVLAFGENMVMSELVECCKELDEVHHALATHKKEAAWRLSRVELQLESEKAGRRREKMEEIEAKIKALREEQTAALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHLRLTKFLEQVGCRSRLTEPNGR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01499 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Pumo5g01499 356 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Pumo5g01499 356 Gene3D - 4 58 - -
Pumo5g01499 356 CDD SANT 6 53 IPR001005 -
Pumo5g01499 356 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Pumo5g01499 356 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Pumo5g01499 356 FunFam MYB-related transcription factor 4 58 - -
Pumo5g01499 356 Pfam Myb-like DNA-binding domain 7 66 - -
Pumo5g01499 356 SMART sant 58 106 IPR001005 -
Pumo5g01499 356 SMART sant 3 55 IPR001005 -
Pumo5g01499 356 CDD SANT 63 104 IPR001005 -
Pumo5g01499 356 Coils Coil 305 325 - -
Pumo5g01499 356 Gene3D - 62 123 - -
Pumo5g01499 356 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 351 - -
Pumo5g01499 356 Coils Coil 276 303 - -
Pumo5g01499 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01499 Pumo-Chr5 39098953 39101930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01499 1 347 MYB Transcription Factor Family AT2G37630 65.479 8.94e-158 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g01499 Myb_DNA-bind_6 8.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01499 K09422 - gmx:100819082 669.463