Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01476 ATGGTTGAGTCAGCCATGTCAAAGGCAATGATGGAGGAAGTAGTAATGGCCACTTCTTGGTCAGAGGGGTCAGAGGATGATGACCTTGTGAGAGAGCTTTTAGATGATGGGTCTCCCCTTCTTATGCTGCCAGAGGAGGCAATTGAACCCCCCAACACAACTAAACCCTCTTCAAGTGATGACCAAGCCTTTAATAGGTTCATCTCCAACATTTACTCAGGACCTACCATCTTAGATATTGAAAATGCTTTGTCAGTTACCAACCAAAGAGACCACCACTTCCCACAACTCTCATCAGCCAGAGTTTCCATATTGGAAAGGGGTTTGAGTAAGATTGAGAATAAGTATACCCTGAAAATCAAATGCTTTGGCAATGGGATGGGTGATGATGGATATAAGTGGAGGAAGTATGGACAGAAATCCATTAAGAATAGCCCAAATCCTAGCAGGAGTTACTATAGGTGCACCAACCCAAGGTGCAGTGCGAAGAAGCAGGTTGAGAGATCCAATGAGGACCCAGACACTCTTATCATAACCTATGAAGGGCTCCACTTGCACTTTGCTTACCCATATTTCCTCATGGGCCAACAACCTCAGCAATCTCATTCCCACCCACCAATCAAGAAGCCCAAGCCCACCTCATCACAGGCCCAAGCCCAAGACCATAGAGCAGATTATGTTCACGAAGCCCAACACACACAAGAAGCCCATGAAGCCCAATCAAATGCCACTTTGGGCCTGATGTCATCCACTTCATTGGACTCTACACAAGGCATGGCCCAAGGAAATTTGGGCTCACAAGGGTTGCTTGAAGATATGGTGCCATTCATGGTTCGGAACCCCACTAACAATGTCAATAGTGCTCACACAAAATTTTCTTGTTCTTCATTACCGTTCTCCTCCAACATCACCTCTTTGGACTTCAACTTACTCCACCTCCTGCTATACCAGGAAGAAGAGGTACTTGGAGTTGGTGGAACAAAAATAATGATATGCCTTGAAGCTTAG 1008 0.4554 MVESAMSKAMMEEVVMATSWSEGSEDDDLVRELLDDGSPLLMLPEEAIEPPNTTKPSSSDDQAFNRFISNIYSGPTILDIENALSVTNQRDHHFPQLSSARVSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPSRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYFLMGQQPQQSHSHPPIKKPKPTSSQAQAQDHRADYVHEAQHTQEAHEAQSNATLGLMSSTSLDSTQGMAQGNLGSQGLLEDMVPFMVRNPTNNVNSAHTKFSCSSLPFSSNITSLDFNLLHLLLYQEEEVLGVGGTKIMICLEA 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01476 335 MobiDBLite consensus disorder prediction 196 221 - -
Pumo5g01476 335 Pfam WRKY DNA -binding domain 129 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g01476 335 SMART WRKY_cls 128 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g01476 335 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 222 IPR044810 GO:0003700
Pumo5g01476 335 SUPERFAMILY WRKY DNA-binding domain 126 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g01476 335 Gene3D WRKY domain 124 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g01476 335 ProSiteProfiles WRKY domain profile. 123 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01476 Pumo-Chr5 38612576 38622411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01476 59 282 WRKY Transcription Factor Family AT5G43290 45.339 5.67e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g01476 WRKY 7.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01476 - - gmx:100810459 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01476 5 38612576 38622411 Pumo5g01476 5 38612576 38622411 ECH