Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01464 ATGGCATCACTGGGATCTGCATCTTCCTTCTGGTGCTACCGATGCAACCGCATCGTTAGGGTTCCACAAAACGACGCCGTTCTCCTCTGCCCCGATTGCCACTCCGGTTTCCTCGAAGAGCTCCAAACCCCTCCCCAATCGCGCCGATCCACGCGCGGCGGCGGCGGCGGGGGGTCCCCCTTCAACCCGGTAATCGTCCTCCGCAACGGAAACGACGTCGTCTCGCCGGAAACGCGGAACTTCGAGCTCTACTACAACGACGACGCCGTTTCGGGCTCGAGCTCCCTCCGGCCCTTGCCGCCAGGAGTAACCGAGTTCCTGATGGGGTCGGGCTTCGACAGTCTACTCGACCAGCTGGAGGGCGCGGCGCCGCAGGCCCCGCAGTCGGCGGCGGCGTCCAAGGCGGCGATCGAGTCGATGCCTGTTGTGAAGATCCTGGCGAGCCACGCCTACGCTGAGTCCCACTGCGCGGTGTGCATGGAGAATTTCGAGGTCGATTGCGACGCACGTGAGATGCCGTGCGGGCACGTGTACCACTCGGAGTGCATCGTGCCGTGGCTCTCGGTGAGAAACTCGTGCCCCGTGTGCCGCCACGAGGTTCCTTCCGACGAAACCGATGATAGCAATAACAATCATAATAATAATATTATTAACAATAACAATACTGTGGGGTTGACCATATGGAGGCTCCCCGGTGGCGGATTCGCTGTGGGCAGGTTCATCGGAGGCAGGGAGCTCCCGCTCGTCTACACGGAGATGGACGGCGGGTTTAACGGCGCTAACGGCGCTAACGGCGTTCCCAGGAGAGTCGCTTGGGATAGCTCCGTTGCTAGGTCGAGGGATTCTAGAGGGCTCGGCGCTGCTTTCAGGAATCTCCTCTCGTATCTCGGGAGGGTTCGGAGCTCGTTTTCTCGCGGAACGAGAAATTCGCGTTCGAACAACGGAAGATCTCGCTCTGCCTCAACGGTTTTTTCTAGGGAATTCGGGTTCAGGGTTTTCCGGTTTGTTTGTGGTTGTGATGAGGTTGAGTCAGGATGGAAGACAGGAAGATGGGATGTCATGTTACGGTCGAAATTGGGGGTGGAAGAGGATCTTGTGTAA 1101 0.5886 MASLGSASSFWCYRCNRIVRVPQNDAVLLCPDCHSGFLEELQTPPQSRRSTRGGGGGGSPFNPVIVLRNGNDVVSPETRNFELYYNDDAVSGSSSLRPLPPGVTEFLMGSGFDSLLDQLEGAAPQAPQSAAASKAAIESMPVVKILASHAYAESHCAVCMENFEVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVPSDETDDSNNNHNNNIINNNNTVGLTIWRLPGGGFAVGRFIGGRELPLVYTEMDGGFNGANGANGVPRRVAWDSSVARSRDSRGLGAAFRNLLSYLGRVRSSFSRGTRNSRSNNGRSRSASTVFSREFGFRVFRFVCGCDEVESGWKTGRWDVMLRSKLGVEEDLV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01464 366 Pfam zinc-ribbon 9 41 IPR039525 GO:0061630
Pumo5g01464 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 203 IPR013083 -
Pumo5g01464 366 ProSiteProfiles Zinc finger RING-type profile. 156 197 IPR001841 -
Pumo5g01464 366 FunFam E3 ubiquitin-protein ligase RING1-like 118 203 - -
Pumo5g01464 366 SMART ring_2 156 196 IPR001841 -
Pumo5g01464 366 MobiDBLite consensus disorder prediction 41 61 - -
Pumo5g01464 366 Pfam Ring finger domain 155 197 IPR001841 -
Pumo5g01464 366 Pfam Protein of unknown function (DUF1117) 223 325 IPR010543 -
Pumo5g01464 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 62 201 - -
Pumo5g01464 366 SUPERFAMILY RING/U-box 136 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01464 Pumo-Chr5 38493051 38494804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01464 98 213 C3H Transcription Factor Family AT5G01980 38.793 6.97e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01464 K11982 - gmx:100798563 474.552