Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01463 ATGTCGTTCAACCGTGGTGGAGAAGAAGATGAGCTCTATGAGCAGCTATGGAAGGCTTGTGCAGGACCCCATGTGGAAGTTCCTCGTGCAGGCCAAAGGGTCTTCTATTTCCCTCAGGGACACATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAGCTTCCCTCCAAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTGCCGGAATCTAATCAAACTGAGCCTACATGCCCTGATCCGTGCCCTGCTGAACCTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACTGCCTCTGATACAAGCACCCATGGTGGCTTCTCTGTCCTCAGGAAGCATGCCACTGAATGCCTTCCAGCATTGGACATGTCTAAACCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTTCAGGGCTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCAAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAACAATGGAGAATTGCGGGTTGGAGTGAGGCGTTTTACTCCTGCGCAGAGCAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCAGCAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTCATTGTAAGTGTGAACAAGTATTTGGAGGCTATCAACCAAAAATGTAATGTTGGTATGAGATTCAAGACGAGGTTTGAAGGGGATGATTCCCCTGAAAATGACAAAAGATTTTCAGGGCACAATAATTGGAGTAGAGGATATTTCCCCTCGCTGGGTAAATTCAAAATGGCGATCTCTTAA 972 0.4568 MSFNRGGEEDELYEQLWKACAGPHVEVPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTCPDPCPAEPPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKPTPTQELVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRFTPAQSSMPSSVISSQSMHLGVLATASHAAATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRFKTRFEGDDSPENDKRFSGHNNWSRGYFPSLGKFKMAIS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01463 323 Pfam B3 DNA binding domain 117 217 IPR003340 GO:0003677
Pumo5g01463 323 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 297 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo5g01463 323 SMART B3_2 117 219 IPR003340 GO:0003677
Pumo5g01463 323 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Pumo5g01463 323 CDD B3_DNA 115 217 IPR003340 GO:0003677
Pumo5g01463 323 Gene3D - 114 218 IPR015300 -
Pumo5g01463 323 Pfam Auxin response factor 243 303 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo5g01463 323 SUPERFAMILY DNA-binding pseudobarrel domain 108 246 IPR015300 -
Pumo5g01463 323 FunFam Auxin response factor 115 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01463 Pumo-Chr5 38461428 38463944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01463 1 303 B3 DNA Binding Superfamily AT2G46530 72.368 4.13e-161 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo5g01463 B3 4.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01463 K14486 - gmx:100799088 566.614