Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01462 ATGAATCAGACAGAAGCAAGTTGGCTATCTTCTCCTTCTCAAGTATATCATGACACAACCGATGATAGCAAGAACATCTCAGCTTGGCCTATTTCAAAACCTCACTCAGAAAGATTGAACAATGATCATTTCCTTGACCAGGTTGACAAGGAGATCAACAAAGTAGAGGCTGCTACAAGCTGTAGATTGTTTGGGATTGACCTTATTGATCATGCCAGAAACAACTCTCTTTCTGTAGAGAATGCATCTGGAGTCACCTCTGAGTGCAAAACTGATGTAAACCATGAGTCTGATATCTCAAAGGCTTCTAAAGAATGGAAACAAGAACAGCTACAAGTATCAACAAAAGAGACTCAAAGCAAGCAAGTTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGATGGGTATGATCAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATCGTCTTCAATGATGATGAAGGAGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAATGTGGTGAAAAGAATCTTCATTTGTTCAAGCCAGGATGTGCACAAATTGAGCTCAGGGAGCAAACTACCAATATCATCTATGGAAGAGATTGTAATAAGCTCAGACTTGTCTGAGACCTGA 711 0.4107 MNQTEASWLSSPSQVYHDTTDDSKNISAWPISKPHSERLNNDHFLDQVDKEINKVEAATSCRLFGIDLIDHARNNSLSVENASGVTSECKTDVNHESDISKASKEWKQEQLQVSTKETQSKQVCSRSCTKVQMQGVAVGRAVDLTTLDGYDQLVDELEKMFDIKGQLQHRNKWEIVFNDDEGDMMLVGDDPWPEFCNVVKRIFICSSQDVHKLSSGSKLPISSMEEIVISSDLSET 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01462 236 MobiDBLite consensus disorder prediction 1 21 - -
Pumo5g01462 236 FunFam Auxin response factor 121 214 - -
Pumo5g01462 236 ProSiteProfiles PB1 domain profile. 126 207 IPR000270 GO:0005515
Pumo5g01462 236 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 214 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo5g01462 236 Pfam AUX/IAA family 105 162 IPR033389 -
Pumo5g01462 236 Pfam AUX/IAA family 169 213 IPR033389 -
Pumo5g01462 236 SUPERFAMILY CAD & PB1 domains 129 202 - -
Pumo5g01462 236 Gene3D - 121 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01462 Pumo-Chr5 38459069 38460621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01462 10 219 B3 DNA Binding Superfamily AT4G23980 48.869 1.26e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo5g01462 AUX_IAA 8e-09 CL0072