Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01461 ATGCCAGATTTTACCTTAACCAACTGTTATCAAGTGAGGTTATCAGACAGCTATGCCAGGGAGGATTTTTGGGATGGCAACAGGGGAGATATGAAGGAGGAAGCACCTCCCCAAAAGAGACTTAAAGCAAGCAAGTTTGTAGTAGAAGTATCAATTAAGGGGGTTGCAGGGGATCGTGTTGTCAACTTGACTACGTTGGATGGGTATGATCAACTTGTAGATGAATTGGAAAAGCTGTTTAACATAAGGGGGCAACTTCAACACAAGAATAAGTGGGAAATTGTCTTCACTGATTATGAGGGGGATATGTTGCTTGTTGGCGATGAACCATGGTTGTGA 339 0.4277 MPDFTLTNCYQVRLSDSYAREDFWDGNRGDMKEEAPPQKRLKASKFVVEVSIKGVAGDRVVNLTTLDGYDQLVDELEKLFNIRGQLQHKNKWEIVFTDYEGDMLLVGDEPWL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01461 112 Gene3D - 41 112 - -
Pumo5g01461 112 ProSiteProfiles PB1 domain profile. 45 112 IPR000270 GO:0005515
Pumo5g01461 112 SUPERFAMILY CAD & PB1 domains 43 111 - -
Pumo5g01461 112 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 111 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01461 Pumo-Chr5 38435731 38440308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01461 38 111 B3 DNA Binding Superfamily AT3G61830 51.351 2.69e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo5g01461 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01461 K14486 - gmx:102665969 119.398