Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01456 ATGTCTATTTTCTTGTTCATCATGGCCACCCTTTTGAAAATTTTATCTCTTTTGATGCTCCTTTTGATCCCAGTTTCATGCCAAGTTGACCAGCTTCTCTATGCTGGATTCAAGGATGTGGGTGCCAGCAACCTAACCTTGAATGGGGTGGCAGAGATAGAGCATAATGGGATACTCAAGTTGACAAATGTGACCAGCAGGTTAATGGGTCATGCTTTTTACCCATCACCTTTTCAGTTGAAGAACTCCACAACTGGTAAAGTTTTCTCCTTTTCTTCCTCCTTTGCTCTTGCTATTGTCCCTGAGTACCCCAAGCTAGGTGGCCATGGCTTGGCTTTCACAATAGCAACTTCTAAGGATATCAAGGCTCTACCTAGCCAGTACCTTGGTCTCCTTAACTCCACTGATAATGGTAACTTCTCCAACCACATATTTGCTGTTGAGTTTGACACTGTGCAAGACTTTGAGTTTGGGGACATTAATGACAACCATGTTGGAATTGACATCAATAGTATGCAGTCCAATGCATCTGCCAATGTTAGTTTGGTGGGTCTCACTCTCAAAAGTGGGAAACCGATTCTAGCTTGGGTTGATTATGATTCTGAATTGAATCTTATAAGTGTTGCACTTTCTCCAAATTCATCCAAACCCAAAACTCCACTCTTAACCTTTAAAGTGGATCTTTCTCCCATTCTTCATGATGCTATGTATGTTGGGTTCTCTGCATCAACTGGTTTGCTTGCTAGCTCTCATTACATCTTGGGTTGGAGCTTTAAAATCAATGGACCAGCACCACCCCTTGATCTCTCTTCTCTCCCACAGCTTCCACGGCCAAAGAAGAAACAAACATCTTTGATAATTGGGATTTCAATCGCAGTTGCTGTTATTGTGTTATTAGCCATCTCCTTTGGCATTTACTTTTACAGAAAAATCAAGAACGCTGATGTGATAGAAGCATGGGAGCTTGAGATTGGGCCACATAGGTACTCCTACCAAGAGCTCAAGAAGGCCACTAGAGGCTTCAAGGACAAAGAGCTTCTTGGGCAGGGTGGTTTTGGCAGAGTTTACAAAGGAACCTTGCCAAATTCCAAGATCCAAGTAGCTGTGAAGCGTGTTTCGCACGAATCCAAGCAGGGCCTGAGGGAATTCGTGTCGGAAATCGCCAGCATAGGCCGGCTTCGCCACCGGAATTTGGTTCAATTACTCGGCTGGTGTCGCCGCCGGGGCGACCTGTTACTTGTGTATGATTTCATGGCCAATGGGAGCTTGGACAAGTACTTGTTTGATGAGCCAAAGATTGTCCTAAATTGGGAGCATAGGTTCAAGATCATAAAGGGTGTTGCTTCGGCTCTTTTGTATCTTCATGAAGGCTATGAGCAAGTGGTGATACATAGAGATGTGAAGGCCAGCAATGTGCTGCTAGATTTTGAGCTTAATGGAAGACTAGGTGATTTTGGATTGGCAAGGTTGTATGAACATGGGGCTAACCCAAGCACCACAAGAGTGGTGGGTACATTAGGCTATTTGGCACCTGAGTTGCCTAGAACAGGAAAGGCAACTACAAGCTCTGATGTCTTTGCATTTGGGGCACTTTTGCTTGAGGTGGCTTGTGGGCGCAGGCCGATTGAGCCTAAGGCATTGCCAGAAGAGTTGGTGTTGGTGGATTGGGTGTGGGAAAAGTACAAACAAGGGAAACTACTTGATGTGGTGGACCCAAAATTAAATGGCAATTTTGATGAAAAGGAGGTGATGGTGGTGCTGAAATTGGGGTTGATGTGCTCAAATGATGTGCCTGCTGCTAGGCCTAGCATGAGGCAAGTGGTGAGGTATTTGGATGGGGAAGTTGAGGTGCCAGAGGACTTGAAAAAGCCAGGGGATATAAGTCATCATGAGGGGTTTGACGAGTTCTTGCACTCACTAGCATCTTCTTCCTTTGATAAGAGTTCAGGCTCCAATTTTGGAAATAGAGACATGGATTCTAGTTTTCTTTCCTTTGCCAATTCACCTCATTCCCTTCTCCCCATGGTAGAGGGGAAACTGGGTGATTCTGCATTATACTGA 2061 0.4483 MSIFLFIMATLLKILSLLMLLLIPVSCQVDQLLYAGFKDVGASNLTLNGVAEIEHNGILKLTNVTSRLMGHAFYPSPFQLKNSTTGKVFSFSSSFALAIVPEYPKLGGHGLAFTIATSKDIKALPSQYLGLLNSTDNGNFSNHIFAVEFDTVQDFEFGDINDNHVGIDINSMQSNASANVSLVGLTLKSGKPILAWVDYDSELNLISVALSPNSSKPKTPLLTFKVDLSPILHDAMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPRPKKKQTSLIIGISIAVAVIVLLAISFGIYFYRKIKNADVIEAWELEIGPHRYSYQELKKATRGFKDKELLGQGGFGRVYKGTLPNSKIQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKIVLNWEHRFKIIKGVASALLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDWVWEKYKQGKLLDVVDPKLNGNFDEKEVMVVLKLGLMCSNDVPAARPSMRQVVRYLDGEVEVPEDLKKPGDISHHEGFDEFLHSLASSSFDKSSGSNFGNRDMDSSFLSFANSPHSLLPMVEGKLGDSALY 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01456 686 SMART serkin_6 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01456 686 ProSiteProfiles Protein kinase domain profile. 341 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g01456 686 CDD lectin_legume_LecRK_Arcelin_ConA 31 262 IPR001220 GO:0030246
Pumo5g01456 686 Pfam Protein tyrosine and serine/threonine kinase 344 611 IPR001245 GO:0004672|GO:0006468
Pumo5g01456 686 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Pumo5g01456 686 Gene3D - 31 261 - -
Pumo5g01456 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Pumo5g01456 686 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Pumo5g01456 686 CDD STKc_IRAK 347 613 - -
Pumo5g01456 686 FunFam Lectin-domain containing receptor kinase A4.3 326 417 - -
Pumo5g01456 686 Pfam Legume lectin domain 32 272 IPR001220 GO:0030246
Pumo5g01456 686 Gene3D Transferase(Phosphotransferase) domain 1 418 627 - -
Pumo5g01456 686 FunFam L-type lectin-domain containing receptor kinase S.4 418 624 - -
Pumo5g01456 686 PANTHER - 25 618 - -
Pumo5g01456 686 FunFam L-type lectin-domain containing receptor kinase S.4 28 266 - -
Pumo5g01456 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 281 IPR013320 -
Pumo5g01456 686 SUPERFAMILY Protein kinase-like (PK-like) 323 634 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01456 Pumo-Chr5 38353328 38356011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01456 25 651 Receptor kinase-like Gene Family AT3G55550 60.374 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pumo5g01456 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01456 - - gmx:100784346 1224.15