Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g01452 | ATGGAGTTCAATTCCCAAAACCCTAACAAATCTGAGATAAGATGGAGTAGCTCAGATGATCAAGGTGGTCCTGGACAAGTAAAGTCTTATTCTTGTTCCTTTTGCAAGAGAGGGTTCTCTAATGCACAGGCACTAGGAGGCCACATGAATATCCATAGAAGAGATAGGGCCAAGCTCAAGCAATCTTCCGAGGAAAACTTGCTTTCTTTGGACATCTCAATCAAGGCAACAAGTGATCATAATAATAATAATAATGACCCTTCTGATTTGAAAGAGAAAATTTTGTTTAGGTTGAGTTCTGGTGAAGAGAAACATGCTAGAAATCATAAATTGCCATTCAATTTTCCTCACAAAGATGATCATCATGATCATGCACCACAAATTCCCCATCTTCCTTCTTTTGTTTTAGGGCAGATGGTTGAGGAGAAGAAAGCTGAATTAGACCTTGAGCTTAGGTTAGGGCTTCATCCTCAGGAATCAGCAACATTGAACACTAGATCGTTCTTTTGA | 510 | 0.3922 | MEFNSQNPNKSEIRWSSSDDQGGPGQVKSYSCSFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISIKATSDHNNNNNDPSDLKEKILFRLSSGEEKHARNHKLPFNFPHKDDHHDHAPQIPHLPSFVLGQMVEEKKAELDLELRLGLHPQESATLNTRSFF | 169 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g01452 | 169 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 32 | 52 | IPR013087 | - | |
Pumo5g01452 | 169 | Gene3D | Classic Zinc Finger | 10 | 89 | - | - | |
Pumo5g01452 | 169 | PANTHER | OS07G0101800 PROTEIN | 10 | 157 | - | - | |
Pumo5g01452 | 169 | SUPERFAMILY | beta-beta-alpha zinc fingers | 28 | 56 | IPR036236 | - | |
Pumo5g01452 | 169 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 30 | 57 | IPR013087 | - | |
Pumo5g01452 | 169 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g01452 | Pumo-Chr5 | 38274021 | 38274530 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g01452 | 3 | 162 | C2H2 Transcription Factor Family | AT3G53820 | 33.750 | 3.69e-18 | 74.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo5g01452 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g01452 | - | - | gmx:100527901 | 282.337 |