Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01451 ATGGAGGAGGGTCAATGTTGGATCAAGAGTAAGAGAAAGTACTCTATGAGCTCTAGTCTTGATTCATCTACTAATTACCCCTCCTCCTATGATGACCACTCATGGGAAGAACAAGCCTTTGCAAAAGATGCAGCTTGGTCTGGTTGCATATGGCCACCGCGATCATATTCTTGTAGCTTTTGCAGAAGGGAATTTAGGTCAGCACAGGCTTTAGGTGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGATTGAAGCAGCCATATAGCCCACAGAATGAAATCCTCAGTGATGATCTTGAGAAAACCCAACTACCCCTGAATTCAGTTCAGATTTCTTTTACTTCTTTGGGTTACTTACACCCATCTTCTCTTAGTGGATTGGCTCATAACAGTACTAACCCTAATTCTGATCCTTGTTCTCATGTTCCTGCTTCACCTTCCAAGGTTTTAGCCACATCAACCAACAAGAGAAGAAGAGAGAAGAAACCCCAGATTCAACTTCACAAAGGATGTCATGAGTCTTCCCCTGATCTTCCTTCCAAATCCTGGTCAAATTTAACTCAAGACTTTAGATTTTATTCACGTAGGCTCGATCCTGAAGCTGATGTTGAGAAAATTTTGAAGGGATTGGATTCTGGGTGTAGGAGTACTGAGGGTGATAATGATAAAACTGATGTGTTTATGAATCGAGCTCACCCACCTGTGCAGTTTGAGACTAAGGAGAAAGATACAAGTTTCAAGAAGAGGAAAGCAGATGCTTCATCCATTCCATTCTTCCCCAAATCATGTTCAGTTGATAGTCATCATATGCAGTCACAGATGTTTGAATTTAGCCCTAGTTCCATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTTATAGGTCCAAGGTATAG 897 0.4158 MEEGQCWIKSKRKYSMSSSLDSSTNYPSSYDDHSWEEQAFAKDAAWSGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQPYSPQNEILSDDLEKTQLPLNSVQISFTSLGYLHPSSLSGLAHNSTNPNSDPCSHVPASPSKVLATSTNKRRREKKPQIQLHKGCHESSPDLPSKSWSNLTQDFRFYSRRLDPEADVEKILKGLDSGCRSTEGDNDKTDVFMNRAHPPVQFETKEKDTSFKKRKADASSIPFFPKSCSVDSHHMQSQMFEFSPSSIEELDLELRLGYRSKV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01451 298 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Pumo5g01451 298 PANTHER OS07G0101800 PROTEIN 29 295 - -
Pumo5g01451 298 SMART c2h2final6 56 78 IPR013087 -
Pumo5g01451 298 MobiDBLite consensus disorder prediction 130 183 - -
Pumo5g01451 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Pumo5g01451 298 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Pumo5g01451 298 MobiDBLite consensus disorder prediction 130 153 - -
Pumo5g01451 298 Gene3D Classic Zinc Finger 53 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01451 Pumo-Chr5 38247959 38248877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01451 34 87 C2H2 Transcription Factor Family AT2G37740 83.333 1.21e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g01451 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01451 - - gmx:100810800 500.36