Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01442 ATGGAGTTCAATTCCCAAAACCCTAACAAATCTGAGATAAGATGGAGTAGCTCAGATGATCAAGGTGGTCCTGGACAAGTAAAGTCTTATTCTTGTTCCTTTTGCAAGAGAGGGTTCTCTAATGCACAGGCACTAGGAGGCCACATGAATATCCATAGAAGAGATAGGGCCAAGCTCAAGCAATCTTCCGAGGAAAACTTGCTTTCTTTGGACATCTCAATCAAGGCAACAAGTGATCATAATAATAATAATAATGACCCTTCTGATTTGAAAGAGAAAATTTTGTTTAGGTTGAGTTCTGGTGAAGAGAAACATGCTAGAAATCATAAATTGCCATTCAATTTTCCTCACAAAGATGATCATCATGATCATGCACCACAAATTCCCCATCTTCCTTCTTTTGTTTTAGGGCAGATGGTTGAGGAGAAGAAAGCTGAATTAGACCTTGAGCTTAGGTTAGGGCTTCATCCTCAGGAATCAGCAACATTGAACACTAGATCGTTCTTTTGA 510 0.3922 MEFNSQNPNKSEIRWSSSDDQGGPGQVKSYSCSFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISIKATSDHNNNNNDPSDLKEKILFRLSSGEEKHARNHKLPFNFPHKDDHHDHAPQIPHLPSFVLGQMVEEKKAELDLELRLGLHPQESATLNTRSFF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01442 169 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Pumo5g01442 169 Gene3D Classic Zinc Finger 10 89 - -
Pumo5g01442 169 PANTHER OS07G0101800 PROTEIN 10 157 - -
Pumo5g01442 169 SUPERFAMILY beta-beta-alpha zinc fingers 28 56 IPR036236 -
Pumo5g01442 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Pumo5g01442 169 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01442 Pumo-Chr5 38046981 38047490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01442 3 162 C2H2 Transcription Factor Family AT3G53820 33.750 3.69e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g01442 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01442 - - gmx:100527901 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01442 5 38046981 38047490 Pumo5g01442 5 38046981 38047490 ECH