Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01416 ATGGCGGAAACGGAGCCTTCTCGGGTGGTGCTCCGGAGCCTGACCCGAATCGCCACCCTCTCCTCCTCCGCCTTCAAGCCCGTTCTCAAGCCCCAATGCTGCGACCTCACTCGCCGAATAAGGTTCCTCGCTCCCCTCTTCCAGGAATTGCAGGACGACGACGTCGTTTCGAGCCGCGCGGTTCCCTTCCACGCGCTCCAAGACGCGCTCTTCAAGGCCATGGAACTGCTCCGATTCGCCACCCGCGCAAGCCAGCTTTTCATGATACTGGATAGAGAGCAAGTTAAGCACAGATTCACTGATGTTGCTGTTCGTTTTGAACATGCGTTAAGCAAGATCTCCTTTGACGAGCTTGATGTTTCTGAAGAAATTAAGGAGCAGGTTGCACTTGTGACCACTCAATTTAGAAGAGCCAAAGAGCAGTTTGATCCGCCAGGATTTCAGATTTATGAGCACCTGATGTCTGTTTACAACCAGAGCTATGATGTGAATACTGAAACTGCTGAACTACGCGTAATCTGTGAAAAGCTACAATTTCTCAACATGGATGACATCAAGCAAGAGTCACTTGCTTTGCAAAAGATGGTTGTAGACAGGGGTGGCCATTCTCAGAAAAACTTACAGGATATGTCATTAGTAATGCTGAAAAAAATCCAAGATTTCTTGGTGATGGAATCTGGAAACAATATTGTGTCAAGTGAGGATTTCTCTCCTCATACTGATGAGCCATATGCGAAATTATGTCCACAATCACTGGTTATACCTGATGAGTTTCGCTGCCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGAACGATCTTGCATAAAGAAATGGCTTGAAGCAGGGCATGGAACATGTCCCAAGACTCAACAGATTCTTTCCAGCTCCATCCTCATACCCAACCAAGCTTTATACGGCTTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGAAATTTATGGCTCTGTAAGACAACATCAGATGGCTCTTCTGAATTAGTAGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAGTGATATTGAGGATCAACGATGTGCAGCAGGGGAGCTCCGACTTCTTGCCAAGCAAAATGGTCAAAATCGAATGCTGATTGCTGAAGCTGGTGCTATACCCCACCTTGTTGATCTCCTCTATGCACCTGATGCTGGCACCCAAGAGCATGCAGTTACTGCTCTTCTGAACTTGTCTATCAGTGTGGATAATAAAGAGCACATCATGGCTTCTGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGGGGTGGATGAGAACAGAGTGGCAATTGGTGCGTCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGTGAGGGAAGTCAAAGAGGGAAGGTGGATGCCGCAAGAGCACTATTCAATCTGTGTTTATCTCAAGGGAACAAAGGACGGGCAATTAGGGCTGGTATTGTGCCTAAGTTGATAGAAATGCTAACAGAACCTGATGGCGAGATGAGGGATGAGGCATTGGCAATAATGGCTGTAGTAGTTAACCATCCTGATGGACAAGCAGCAATTGGATCTATGAATGTTGTATCCACTTTGGTGGAATTAATCAGTAATGGATCTCCTAGGAACAAGGAGAATGCAACTTCAGTGTTGGTTCTCCTCTGTAATGGAGATCCTCTACATTTGTCAATTGTCAGTTCACTTGGGGTGATCAATCCTCTCTTGGACCTGGCTGAAAATGGTTCAGAAAGGGCCAAGAGGAAAGCTTCCCAGCTTCTTGAGTTGATAGGAAACCATTGTGAAAATACAAGGAAAACTATCAGCTAG 1911 0.4584 MAETEPSRVVLRSLTRIATLSSSAFKPVLKPQCCDLTRRIRFLAPLFQELQDDDVVSSRAVPFHALQDALFKAMELLRFATRASQLFMILDREQVKHRFTDVAVRFEHALSKISFDELDVSEEIKEQVALVTTQFRRAKEQFDPPGFQIYEHLMSVYNQSYDVNTETAELRVICEKLQFLNMDDIKQESLALQKMVVDRGGHSQKNLQDMSLVMLKKIQDFLVMESGNNIVSSEDFSPHTDEPYAKLCPQSLVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSSSILIPNQALYGLISSWCEANGVEPPKRLGNLWLCKTTSDGSSELVDLDILVSKLSSSDIEDQRCAAGELRLLAKQNGQNRMLIAEAGAIPHLVDLLYAPDAGTQEHAVTALLNLSISVDNKEHIMASEAVPGILHVLENGSMEARENAAATFFSLSGVDENRVAIGASGAIQALVTLFCEGSQRGKVDAARALFNLCLSQGNKGRAIRAGIVPKLIEMLTEPDGEMRDEALAIMAVVVNHPDGQAAIGSMNVVSTLVELISNGSPRNKENATSVLVLLCNGDPLHLSIVSSLGVINPLLDLAENGSERAKRKASQLLELIGNHCENTRKTIS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01416 636 CDD RING-Ubox_PUB 255 307 IPR045210 -
Pumo5g01416 636 ProSiteProfiles U-box domain profile. 253 327 IPR003613 GO:0004842|GO:0016567
Pumo5g01416 636 PANTHER U BOX DOMAIN-CONTAINING 31 624 - -
Pumo5g01416 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 391 433 IPR000225 GO:0005515
Pumo5g01416 636 Pfam Armadillo/beta-catenin-like repeat 382 419 IPR000225 GO:0005515
Pumo5g01416 636 Pfam Armadillo/beta-catenin-like repeat 463 501 IPR000225 GO:0005515
Pumo5g01416 636 SUPERFAMILY RING/U-box 254 330 - -
Pumo5g01416 636 FunFam RING-type E3 ubiquitin transferase 253 327 - -
Pumo5g01416 636 FunFam RING-type E3 ubiquitin transferase 337 630 - -
Pumo5g01416 636 SUPERFAMILY ARM repeat 350 629 IPR016024 -
Pumo5g01416 636 Gene3D - 491 636 IPR011989 -
Pumo5g01416 636 Gene3D - 28 116 IPR036537 GO:0007166
Pumo5g01416 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 327 IPR013083 -
Pumo5g01416 636 SMART arm_5 586 626 IPR000225 GO:0005515
Pumo5g01416 636 SMART arm_5 421 461 IPR000225 GO:0005515
Pumo5g01416 636 SMART arm_5 380 420 IPR000225 GO:0005515
Pumo5g01416 636 SMART arm_5 544 584 IPR000225 GO:0005515
Pumo5g01416 636 SMART arm_5 462 502 IPR000225 GO:0005515
Pumo5g01416 636 SMART arm_5 503 543 IPR000225 GO:0005515
Pumo5g01416 636 SMART Ubox_2 257 320 IPR003613 GO:0004842|GO:0016567
Pumo5g01416 636 Gene3D - 331 490 IPR011989 -
Pumo5g01416 636 Pfam U-box domain 254 324 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01416 Pumo-Chr5 37088943 37095803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01416 23 634 U-box Gene Family AT3G46510 49.675 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01416 - - vum:124836668 1012.68